705 lines
24 KiB
Python
705 lines
24 KiB
Python
# -*- coding: utf-8 -*-
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# Copyright (c) 2018, imageio contributors
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# imageio is distributed under the terms of the (new) BSD License.
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#
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""" Lytro Illum Plugin.
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Plugin to read Lytro Illum .lfr and .raw files as produced
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by the Lytro Illum light field camera.
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"""
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#
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#
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# This code is based on work by
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# David Uhlig and his lfr_reader
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# (https://www.iiit.kit.edu/uhlig.php)
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# Donald Dansereau and his Matlab LF Toolbox
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# (http://dgd.vision/Tools/LFToolbox/)
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# and Behnam Esfahbod and his Python LFP-Reader
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# (https://github.com/behnam/python-lfp-reader/)
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import os
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import json
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import struct
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import logging
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import numpy as np
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from .. import formats
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from ..core import Format
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from .. import imread
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logger = logging.getLogger(__name__)
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# Sensor size of Lytro Illum resp. Lytro F01 light field camera sensor
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LYTRO_ILLUM_IMAGE_SIZE = (5368, 7728)
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LYTRO_F01_IMAGE_SIZE = (3280, 3280)
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# Parameter of lfr file format
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HEADER_LENGTH = 12
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SIZE_LENGTH = 4 # = 16 - header_length
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SHA1_LENGTH = 45 # = len("sha1-") + (160 / 4)
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PADDING_LENGTH = 35 # = (4*16) - header_length - size_length - sha1_length
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DATA_CHUNKS_ILLUM = 11
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DATA_CHUNKS_F01 = 3
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class LytroFormat(Format):
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""" Base class for Lytro format.
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The subclasses LytroLfrFormat, LytroLfpFormat, LytroIllumRawFormat and
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LytroF01RawFormat implement the Lytro-LFR, Lytro-LFP and Lytro-RAW format
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for the Illum and original F01 camera respectively.
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Writing is not supported.
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"""
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# Only single images are supported.
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_modes = "i"
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def _can_write(self, request):
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# Writing of Lytro files is not supported
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return False
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# -- writer
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class Writer(Format.Writer):
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def _open(self, flags=0):
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self._fp = self.request.get_file()
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def _close(self):
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# Close the reader.
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# Note that the request object will close self._fp
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pass
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def _append_data(self, im, meta):
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# Process the given data and meta data.
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raise RuntimeError("The lytro format cannot write image data.")
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def _set_meta_data(self, meta):
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# Process the given meta data (global for all images)
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# It is not mandatory to support this.
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raise RuntimeError("The lytro format cannot write meta data.")
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class LytroIllumRawFormat(LytroFormat):
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""" This is the Lytro Illum RAW format.
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The raw format is a 10bit image format as used by the Lytro Illum
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light field camera. The format will read the specified raw file and will
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try to load a .txt or .json file with the associated meta data.
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This format does not support writing.
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Parameters for reading
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----------------------
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None
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"""
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def _can_read(self, request):
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# Check if mode and extensions are supported by the format
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if request.mode[1] in (self.modes + "?"):
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if request.extension in (".raw",):
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return True
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@staticmethod
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def rearrange_bits(array):
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# Do bit rearrangement for the 10-bit lytro raw format
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# Normalize output to 1.0 as float64
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t0 = array[0::5]
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t1 = array[1::5]
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t2 = array[2::5]
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t3 = array[3::5]
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lsb = array[4::5]
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t0 = np.left_shift(t0, 2) + np.bitwise_and(lsb, 3)
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t1 = np.left_shift(t1, 2) + np.right_shift(np.bitwise_and(lsb, 12), 2)
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t2 = np.left_shift(t2, 2) + np.right_shift(np.bitwise_and(lsb, 48), 4)
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t3 = np.left_shift(t3, 2) + np.right_shift(np.bitwise_and(lsb, 192), 6)
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image = np.zeros(LYTRO_ILLUM_IMAGE_SIZE, dtype=np.uint16)
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image[:, 0::4] = t0.reshape(
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(LYTRO_ILLUM_IMAGE_SIZE[0], LYTRO_ILLUM_IMAGE_SIZE[1] // 4)
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)
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image[:, 1::4] = t1.reshape(
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(LYTRO_ILLUM_IMAGE_SIZE[0], LYTRO_ILLUM_IMAGE_SIZE[1] // 4)
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)
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image[:, 2::4] = t2.reshape(
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(LYTRO_ILLUM_IMAGE_SIZE[0], LYTRO_ILLUM_IMAGE_SIZE[1] // 4)
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)
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image[:, 3::4] = t3.reshape(
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(LYTRO_ILLUM_IMAGE_SIZE[0], LYTRO_ILLUM_IMAGE_SIZE[1] // 4)
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)
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# Normalize data to 1.0 as 64-bit float.
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# Division is by 1023 as the Lytro Illum saves 10-bit raw data.
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return np.divide(image, 1023.0).astype(np.float64)
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# -- reader
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class Reader(Format.Reader):
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def _open(self):
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self._file = self.request.get_file()
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self._data = None
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def _close(self):
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# Close the reader.
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# Note that the request object will close self._file
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del self._data
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def _get_length(self):
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# Return the number of images.
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return 1
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def _get_data(self, index):
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# Return the data and meta data for the given index
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if index not in [0, "None"]:
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raise IndexError("Lytro file contains only one dataset")
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# Read all bytes
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if self._data is None:
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self._data = self._file.read()
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# Read bytes from string and convert to uint16
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raw = np.frombuffer(self._data, dtype=np.uint8).astype(np.uint16)
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# Rearrange bits
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img = LytroIllumRawFormat.rearrange_bits(raw)
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# Return image and meta data
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return img, self._get_meta_data(index=0)
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def _get_meta_data(self, index):
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# Get the meta data for the given index. If index is None, it
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# should return the global meta data.
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if index not in [0, None]:
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raise IndexError("Lytro meta data file contains only one dataset")
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# Try to read meta data from meta data file corresponding
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# to the raw data file, extension in [.txt, .TXT, .json, .JSON]
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filename_base = os.path.splitext(self.request.get_local_filename())[0]
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meta_data = None
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for ext in [".txt", ".TXT", ".json", ".JSON"]:
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if os.path.isfile(filename_base + ext):
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meta_data = json.load(open(filename_base + ext))
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if meta_data is not None:
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return meta_data
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else:
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logger.warning("No metadata file found for provided raw file.")
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return {}
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class LytroLfrFormat(LytroFormat):
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""" This is the Lytro Illum LFR format.
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The lfr is a image and meta data container format as used by the
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Lytro Illum light field camera.
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The format will read the specified lfr file.
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This format does not support writing.
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Parameters for reading
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----------------------
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None
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"""
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def _can_read(self, request):
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# Check if mode and extensions are supported by the format
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if request.mode[1] in (self.modes + "?"):
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if request.extension in (".lfr",):
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return True
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# -- reader
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class Reader(Format.Reader):
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def _open(self):
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self._file = self.request.get_file()
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self._data = None
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self._chunks = {}
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self.metadata = {}
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self._content = None
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self._find_header()
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self._find_chunks()
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self._find_meta()
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try:
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# Get sha1 dict and check if it is in dictionary of data chunks
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chunk_dict = self._content["frames"][0]["frame"]
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if (
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chunk_dict["metadataRef"] in self._chunks
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and chunk_dict["imageRef"] in self._chunks
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and chunk_dict["privateMetadataRef"] in self._chunks
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):
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# Read raw image data byte buffer
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data_pos, size = self._chunks[chunk_dict["imageRef"]]
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self._file.seek(data_pos, 0)
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self.raw_image_data = self._file.read(size)
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# Read meta data
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data_pos, size = self._chunks[chunk_dict["metadataRef"]]
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self._file.seek(data_pos, 0)
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metadata = self._file.read(size)
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# Add metadata to meta data dict
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self.metadata["metadata"] = json.loads(metadata.decode("ASCII"))
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# Read private metadata
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data_pos, size = self._chunks[chunk_dict["privateMetadataRef"]]
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self._file.seek(data_pos, 0)
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serial_numbers = self._file.read(size)
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self.serial_numbers = json.loads(serial_numbers.decode("ASCII"))
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# Add private metadata to meta data dict
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self.metadata["privateMetadata"] = self.serial_numbers
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# Read image preview thumbnail
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chunk_dict = self._content["thumbnails"][0]
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if chunk_dict["imageRef"] in self._chunks:
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# Read thumbnail image from thumbnail chunk
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data_pos, size = self._chunks[chunk_dict["imageRef"]]
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self._file.seek(data_pos, 0)
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# Read binary data, read image as jpeg
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thumbnail_data = self._file.read(size)
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thumbnail_img = imread(thumbnail_data, format="jpeg")
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thumbnail_height = chunk_dict["height"]
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thumbnail_width = chunk_dict["width"]
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# Add thumbnail to metadata
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self.metadata["thumbnail"] = {
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"image": thumbnail_img,
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"height": thumbnail_height,
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"width": thumbnail_width,
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}
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except KeyError:
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raise RuntimeError("The specified file is not a valid LFR file.")
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def _close(self):
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# Close the reader.
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# Note that the request object will close self._file
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del self._data
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def _get_length(self):
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# Return the number of images. Can be np.inf
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return 1
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def _find_header(self):
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"""
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Checks if file has correct header and skip it.
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"""
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file_header = b"\x89LFP\x0D\x0A\x1A\x0A\x00\x00\x00\x01"
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# Read and check header of file
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header = self._file.read(HEADER_LENGTH)
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if header != file_header:
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raise RuntimeError("The LFR file header is invalid.")
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# Read first bytes to skip header
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self._file.read(SIZE_LENGTH)
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def _find_chunks(self):
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"""
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Gets start position and size of data chunks in file.
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"""
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chunk_header = b"\x89LFC\x0D\x0A\x1A\x0A\x00\x00\x00\x00"
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for i in range(0, DATA_CHUNKS_ILLUM):
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data_pos, size, sha1 = self._get_chunk(chunk_header)
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self._chunks[sha1] = (data_pos, size)
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def _find_meta(self):
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"""
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Gets a data chunk that contains information over content
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of other data chunks.
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"""
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meta_header = b"\x89LFM\x0D\x0A\x1A\x0A\x00\x00\x00\x00"
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data_pos, size, sha1 = self._get_chunk(meta_header)
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# Get content
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self._file.seek(data_pos, 0)
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data = self._file.read(size)
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self._content = json.loads(data.decode("ASCII"))
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def _get_chunk(self, header):
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"""
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Checks if chunk has correct header and skips it.
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Finds start position and length of next chunk and reads
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sha1-string that identifies the following data chunk.
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Parameters
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----------
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header : bytes
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Byte string that identifies start of chunk.
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Returns
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-------
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data_pos : int
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Start position of data chunk in file.
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size : int
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Size of data chunk.
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sha1 : str
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Sha1 value of chunk.
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"""
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# Read and check header of chunk
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header_chunk = self._file.read(HEADER_LENGTH)
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if header_chunk != header:
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raise RuntimeError("The LFR chunk header is invalid.")
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data_pos = None
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sha1 = None
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# Read size
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size = struct.unpack(">i", self._file.read(SIZE_LENGTH))[0]
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if size > 0:
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# Read sha1
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sha1 = str(self._file.read(SHA1_LENGTH).decode("ASCII"))
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# Skip fixed null chars
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self._file.read(PADDING_LENGTH)
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# Find start of data and skip data
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data_pos = self._file.tell()
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self._file.seek(size, 1)
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# Skip extra null chars
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ch = self._file.read(1)
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while ch == b"\0":
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ch = self._file.read(1)
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self._file.seek(-1, 1)
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return data_pos, size, sha1
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def _get_data(self, index):
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# Return the data and meta data for the given index
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if index not in [0, None]:
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raise IndexError("Lytro lfr file contains only one dataset")
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# Read bytes from string and convert to uint16
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raw = np.frombuffer(self.raw_image_data, dtype=np.uint8).astype(np.uint16)
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im = LytroIllumRawFormat.rearrange_bits(raw)
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# Return array and dummy meta data
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return im, self.metadata
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def _get_meta_data(self, index):
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# Get the meta data for the given index. If index is None,
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# it returns the global meta data.
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if index not in [0, None]:
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raise IndexError("Lytro meta data file contains only one dataset")
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return self.metadata
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class LytroF01RawFormat(LytroFormat):
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""" This is the Lytro RAW format for the original F01 Lytro camera.
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The raw format is a 12bit image format as used by the Lytro F01
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light field camera. The format will read the specified raw file and will
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try to load a .txt or .json file with the associated meta data.
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This format does not support writing.
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Parameters for reading
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----------------------
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None
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"""
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def _can_read(self, request):
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# Check if mode and extensions are supported by the format
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if request.mode[1] in (self.modes + "?"):
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if request.extension in (".raw",):
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return True
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@staticmethod
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def rearrange_bits(array):
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# Do bit rearrangement for the 12-bit lytro raw format
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# Normalize output to 1.0 as float64
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t0 = array[0::3]
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t1 = array[1::3]
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t2 = array[2::3]
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a0 = np.left_shift(t0, 4) + np.right_shift(np.bitwise_and(t1, 240), 4)
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a1 = np.left_shift(np.bitwise_and(t1, 15), 8) + t2
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image = np.zeros(LYTRO_F01_IMAGE_SIZE, dtype=np.uint16)
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image[:, 0::2] = a0.reshape(
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(LYTRO_F01_IMAGE_SIZE[0], LYTRO_F01_IMAGE_SIZE[1] // 2)
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)
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image[:, 1::2] = a1.reshape(
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(LYTRO_F01_IMAGE_SIZE[0], LYTRO_F01_IMAGE_SIZE[1] // 2)
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)
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# Normalize data to 1.0 as 64-bit float.
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# Division is by 4095 as the Lytro F01 saves 12-bit raw data.
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return np.divide(image, 4095.0).astype(np.float64)
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# -- reader
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class Reader(Format.Reader):
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def _open(self):
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self._file = self.request.get_file()
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self._data = None
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def _close(self):
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# Close the reader.
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# Note that the request object will close self._file
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del self._data
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def _get_length(self):
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# Return the number of images.
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return 1
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def _get_data(self, index):
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# Return the data and meta data for the given index
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if index not in [0, "None"]:
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raise IndexError("Lytro file contains only one dataset")
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# Read all bytes
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if self._data is None:
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self._data = self._file.read()
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# Read bytes from string and convert to uint16
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raw = np.frombuffer(self._data, dtype=np.uint8).astype(np.uint16)
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# Rearrange bits
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img = LytroF01RawFormat.rearrange_bits(raw)
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# Return image and meta data
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return img, self._get_meta_data(index=0)
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def _get_meta_data(self, index):
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# Get the meta data for the given index. If index is None, it
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# should return the global meta data.
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if index not in [0, None]:
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raise IndexError("Lytro meta data file contains only one dataset")
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# Try to read meta data from meta data file corresponding
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# to the raw data file, extension in [.txt, .TXT, .json, .JSON]
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filename_base = os.path.splitext(self.request.get_local_filename())[0]
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meta_data = None
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for ext in [".txt", ".TXT", ".json", ".JSON"]:
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if os.path.isfile(filename_base + ext):
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meta_data = json.load(open(filename_base + ext))
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if meta_data is not None:
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return meta_data
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else:
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logger.warning("No metadata file found for provided raw file.")
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return {}
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class LytroLfpFormat(LytroFormat):
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""" This is the Lytro Illum LFP format.
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The lfp is a image and meta data container format as used by the
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Lytro F01 light field camera.
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The format will read the specified lfp file.
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This format does not support writing.
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Parameters for reading
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----------------------
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None
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"""
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def _can_read(self, request):
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# Check if mode and extensions are supported by the format
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if request.mode[1] in (self.modes + "?"):
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if request.extension in (".lfp",):
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return True
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# -- reader
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class Reader(Format.Reader):
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def _open(self):
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self._file = self.request.get_file()
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self._data = None
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self._chunks = {}
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self.metadata = {}
|
|
self._content = None
|
|
|
|
self._find_header()
|
|
self._find_meta()
|
|
self._find_chunks()
|
|
|
|
try:
|
|
# Get sha1 dict and check if it is in dictionary of data chunks
|
|
chunk_dict = self._content["picture"]["frameArray"][0]["frame"]
|
|
if (
|
|
chunk_dict["metadataRef"] in self._chunks
|
|
and chunk_dict["imageRef"] in self._chunks
|
|
and chunk_dict["privateMetadataRef"] in self._chunks
|
|
):
|
|
|
|
# Read raw image data byte buffer
|
|
data_pos, size = self._chunks[chunk_dict["imageRef"]]
|
|
self._file.seek(data_pos, 0)
|
|
self.raw_image_data = self._file.read(size)
|
|
|
|
# Read meta data
|
|
data_pos, size = self._chunks[chunk_dict["metadataRef"]]
|
|
self._file.seek(data_pos, 0)
|
|
metadata = self._file.read(size)
|
|
# Add metadata to meta data dict
|
|
self.metadata["metadata"] = json.loads(metadata.decode("ASCII"))
|
|
|
|
# Read private metadata
|
|
data_pos, size = self._chunks[chunk_dict["privateMetadataRef"]]
|
|
self._file.seek(data_pos, 0)
|
|
serial_numbers = self._file.read(size)
|
|
self.serial_numbers = json.loads(serial_numbers.decode("ASCII"))
|
|
# Add private metadata to meta data dict
|
|
self.metadata["privateMetadata"] = self.serial_numbers
|
|
|
|
except KeyError:
|
|
raise RuntimeError("The specified file is not a valid LFP file.")
|
|
|
|
def _close(self):
|
|
# Close the reader.
|
|
# Note that the request object will close self._file
|
|
del self._data
|
|
|
|
def _get_length(self):
|
|
# Return the number of images. Can be np.inf
|
|
return 1
|
|
|
|
def _find_header(self):
|
|
"""
|
|
Checks if file has correct header and skip it.
|
|
"""
|
|
file_header = b"\x89LFP\x0D\x0A\x1A\x0A\x00\x00\x00\x01"
|
|
|
|
# Read and check header of file
|
|
header = self._file.read(HEADER_LENGTH)
|
|
if header != file_header:
|
|
raise RuntimeError("The LFP file header is invalid.")
|
|
|
|
# Read first bytes to skip header
|
|
self._file.read(SIZE_LENGTH)
|
|
|
|
def _find_chunks(self):
|
|
"""
|
|
Gets start position and size of data chunks in file.
|
|
"""
|
|
chunk_header = b"\x89LFC\x0D\x0A\x1A\x0A\x00\x00\x00\x00"
|
|
|
|
for i in range(0, DATA_CHUNKS_F01):
|
|
data_pos, size, sha1 = self._get_chunk(chunk_header)
|
|
self._chunks[sha1] = (data_pos, size)
|
|
|
|
def _find_meta(self):
|
|
"""
|
|
Gets a data chunk that contains information over content
|
|
of other data chunks.
|
|
"""
|
|
meta_header = b"\x89LFM\x0D\x0A\x1A\x0A\x00\x00\x00\x00"
|
|
|
|
data_pos, size, sha1 = self._get_chunk(meta_header)
|
|
|
|
# Get content
|
|
self._file.seek(data_pos, 0)
|
|
data = self._file.read(size)
|
|
self._content = json.loads(data.decode("ASCII"))
|
|
data = self._file.read(5) # Skip 5
|
|
|
|
def _get_chunk(self, header):
|
|
"""
|
|
Checks if chunk has correct header and skips it.
|
|
Finds start position and length of next chunk and reads
|
|
sha1-string that identifies the following data chunk.
|
|
|
|
Parameters
|
|
----------
|
|
header : bytes
|
|
Byte string that identifies start of chunk.
|
|
|
|
Returns
|
|
-------
|
|
data_pos : int
|
|
Start position of data chunk in file.
|
|
size : int
|
|
Size of data chunk.
|
|
sha1 : str
|
|
Sha1 value of chunk.
|
|
"""
|
|
# Read and check header of chunk
|
|
header_chunk = self._file.read(HEADER_LENGTH)
|
|
if header_chunk != header:
|
|
raise RuntimeError("The LFP chunk header is invalid.")
|
|
|
|
data_pos = None
|
|
sha1 = None
|
|
|
|
# Read size
|
|
size = struct.unpack(">i", self._file.read(SIZE_LENGTH))[0]
|
|
if size > 0:
|
|
# Read sha1
|
|
sha1 = str(self._file.read(SHA1_LENGTH).decode("ASCII"))
|
|
# Skip fixed null chars
|
|
self._file.read(PADDING_LENGTH)
|
|
# Find start of data and skip data
|
|
data_pos = self._file.tell()
|
|
self._file.seek(size, 1)
|
|
# Skip extra null chars
|
|
ch = self._file.read(1)
|
|
while ch == b"\0":
|
|
ch = self._file.read(1)
|
|
self._file.seek(-1, 1)
|
|
|
|
return data_pos, size, sha1
|
|
|
|
def _get_data(self, index):
|
|
# Return the data and meta data for the given index
|
|
if index not in [0, None]:
|
|
raise IndexError("Lytro lfp file contains only one dataset")
|
|
|
|
# Read bytes from string and convert to uint16
|
|
raw = np.frombuffer(self.raw_image_data, dtype=np.uint8).astype(np.uint16)
|
|
im = LytroF01RawFormat.rearrange_bits(raw)
|
|
|
|
# Return array and dummy meta data
|
|
return im, self.metadata
|
|
|
|
def _get_meta_data(self, index):
|
|
# Get the meta data for the given index. If index is None,
|
|
# it returns the global meta data.
|
|
if index not in [0, None]:
|
|
raise IndexError("Lytro meta data file contains only one dataset")
|
|
|
|
return self.metadata
|
|
|
|
|
|
# Create the formats
|
|
SPECIAL_CLASSES = {
|
|
"lytro-lfr": LytroLfrFormat,
|
|
"lytro-illum-raw": LytroIllumRawFormat,
|
|
"lytro-lfp": LytroLfpFormat,
|
|
"lytro-f01-raw": LytroF01RawFormat,
|
|
}
|
|
|
|
# Supported Formats.
|
|
# Only single image files supported.
|
|
file_formats = [
|
|
("LYTRO-LFR", "Lytro Illum lfr image file", "lfr", "i"),
|
|
("LYTRO-ILLUM-RAW", "Lytro Illum raw image file", "raw", "i"),
|
|
("LYTRO-LFP", "Lytro F01 lfp image file", "lfp", "i"),
|
|
("LYTRO-F01-RAW", "Lytro F01 raw image file", "raw", "i"),
|
|
]
|
|
|
|
|
|
def _create_predefined_lytro_formats():
|
|
for name, des, ext, i in file_formats:
|
|
# Get format class for format
|
|
format_class = SPECIAL_CLASSES.get(name.lower(), LytroFormat)
|
|
if format_class:
|
|
# Create Format and add
|
|
format = format_class(name, des, ext, i)
|
|
formats.add_format(format=format)
|
|
|
|
|
|
# Register all created formats.
|
|
_create_predefined_lytro_formats()
|