166 lines
5.7 KiB
Python
166 lines
5.7 KiB
Python
""" Sketching-based Matrix Computations """
|
|
|
|
# Author: Jordi Montes <jomsdev@gmail.com>
|
|
# August 28, 2017
|
|
|
|
import numpy as np
|
|
|
|
from scipy._lib._util import check_random_state, rng_integers
|
|
from scipy.sparse import csc_matrix
|
|
|
|
__all__ = ['clarkson_woodruff_transform']
|
|
|
|
|
|
def cwt_matrix(n_rows, n_columns, seed=None):
|
|
r""""
|
|
Generate a matrix S which represents a Clarkson-Woodruff transform.
|
|
|
|
Given the desired size of matrix, the method returns a matrix S of size
|
|
(n_rows, n_columns) where each column has all the entries set to 0
|
|
except for one position which has been randomly set to +1 or -1 with
|
|
equal probability.
|
|
|
|
Parameters
|
|
----------
|
|
n_rows: int
|
|
Number of rows of S
|
|
n_columns: int
|
|
Number of columns of S
|
|
seed : None or int or `numpy.random.RandomState` instance, optional
|
|
This parameter defines the ``RandomState`` object to use for drawing
|
|
random variates.
|
|
If None (or ``np.random``), the global ``np.random`` state is used.
|
|
If integer, it is used to seed the local ``RandomState`` instance.
|
|
Default is None.
|
|
|
|
Returns
|
|
-------
|
|
S : (n_rows, n_columns) csc_matrix
|
|
The returned matrix has ``n_columns`` nonzero entries.
|
|
|
|
Notes
|
|
-----
|
|
Given a matrix A, with probability at least 9/10,
|
|
.. math:: \|SA\| = (1 \pm \epsilon)\|A\|
|
|
Where the error epsilon is related to the size of S.
|
|
"""
|
|
rng = check_random_state(seed)
|
|
rows = rng_integers(rng, 0, n_rows, n_columns)
|
|
cols = np.arange(n_columns+1)
|
|
signs = rng.choice([1, -1], n_columns)
|
|
S = csc_matrix((signs, rows, cols),shape=(n_rows, n_columns))
|
|
return S
|
|
|
|
|
|
def clarkson_woodruff_transform(input_matrix, sketch_size, seed=None):
|
|
r""""
|
|
Applies a Clarkson-Woodruff Transform/sketch to the input matrix.
|
|
|
|
Given an input_matrix ``A`` of size ``(n, d)``, compute a matrix ``A'`` of
|
|
size (sketch_size, d) so that
|
|
|
|
.. math:: \|Ax\| \approx \|A'x\|
|
|
|
|
with high probability via the Clarkson-Woodruff Transform, otherwise
|
|
known as the CountSketch matrix.
|
|
|
|
Parameters
|
|
----------
|
|
input_matrix: array_like
|
|
Input matrix, of shape ``(n, d)``.
|
|
sketch_size: int
|
|
Number of rows for the sketch.
|
|
seed : None or int or `numpy.random.RandomState` instance, optional
|
|
This parameter defines the ``RandomState`` object to use for drawing
|
|
random variates.
|
|
If None (or ``np.random``), the global ``np.random`` state is used.
|
|
If integer, it is used to seed the local ``RandomState`` instance.
|
|
Default is None.
|
|
|
|
Returns
|
|
-------
|
|
A' : array_like
|
|
Sketch of the input matrix ``A``, of size ``(sketch_size, d)``.
|
|
|
|
Notes
|
|
-----
|
|
To make the statement
|
|
|
|
.. math:: \|Ax\| \approx \|A'x\|
|
|
|
|
precise, observe the following result which is adapted from the
|
|
proof of Theorem 14 of [2]_ via Markov's Inequality. If we have
|
|
a sketch size ``sketch_size=k`` which is at least
|
|
|
|
.. math:: k \geq \frac{2}{\epsilon^2\delta}
|
|
|
|
Then for any fixed vector ``x``,
|
|
|
|
.. math:: \|Ax\| = (1\pm\epsilon)\|A'x\|
|
|
|
|
with probability at least one minus delta.
|
|
|
|
This implementation takes advantage of sparsity: computing
|
|
a sketch takes time proportional to ``A.nnz``. Data ``A`` which
|
|
is in ``scipy.sparse.csc_matrix`` format gives the quickest
|
|
computation time for sparse input.
|
|
|
|
>>> from scipy import linalg
|
|
>>> from scipy import sparse
|
|
>>> n_rows, n_columns, density, sketch_n_rows = 15000, 100, 0.01, 200
|
|
>>> A = sparse.rand(n_rows, n_columns, density=density, format='csc')
|
|
>>> B = sparse.rand(n_rows, n_columns, density=density, format='csr')
|
|
>>> C = sparse.rand(n_rows, n_columns, density=density, format='coo')
|
|
>>> D = np.random.randn(n_rows, n_columns)
|
|
>>> SA = linalg.clarkson_woodruff_transform(A, sketch_n_rows) # fastest
|
|
>>> SB = linalg.clarkson_woodruff_transform(B, sketch_n_rows) # fast
|
|
>>> SC = linalg.clarkson_woodruff_transform(C, sketch_n_rows) # slower
|
|
>>> SD = linalg.clarkson_woodruff_transform(D, sketch_n_rows) # slowest
|
|
|
|
That said, this method does perform well on dense inputs, just slower
|
|
on a relative scale.
|
|
|
|
Examples
|
|
--------
|
|
Given a big dense matrix ``A``:
|
|
|
|
>>> from scipy import linalg
|
|
>>> n_rows, n_columns, sketch_n_rows = 15000, 100, 200
|
|
>>> A = np.random.randn(n_rows, n_columns)
|
|
>>> sketch = linalg.clarkson_woodruff_transform(A, sketch_n_rows)
|
|
>>> sketch.shape
|
|
(200, 100)
|
|
>>> norm_A = np.linalg.norm(A)
|
|
>>> norm_sketch = np.linalg.norm(sketch)
|
|
|
|
Now with high probability, the true norm ``norm_A`` is close to
|
|
the sketched norm ``norm_sketch`` in absolute value.
|
|
|
|
Similarly, applying our sketch preserves the solution to a linear
|
|
regression of :math:`\min \|Ax - b\|`.
|
|
|
|
>>> from scipy import linalg
|
|
>>> n_rows, n_columns, sketch_n_rows = 15000, 100, 200
|
|
>>> A = np.random.randn(n_rows, n_columns)
|
|
>>> b = np.random.randn(n_rows)
|
|
>>> x = np.linalg.lstsq(A, b, rcond=None)
|
|
>>> Ab = np.hstack((A, b.reshape(-1,1)))
|
|
>>> SAb = linalg.clarkson_woodruff_transform(Ab, sketch_n_rows)
|
|
>>> SA, Sb = SAb[:,:-1], SAb[:,-1]
|
|
>>> x_sketched = np.linalg.lstsq(SA, Sb, rcond=None)
|
|
|
|
As with the matrix norm example, ``np.linalg.norm(A @ x - b)``
|
|
is close to ``np.linalg.norm(A @ x_sketched - b)`` with high
|
|
probability.
|
|
|
|
References
|
|
----------
|
|
.. [1] Kenneth L. Clarkson and David P. Woodruff. Low rank approximation and
|
|
regression in input sparsity time. In STOC, 2013.
|
|
|
|
.. [2] David P. Woodruff. Sketching as a tool for numerical linear algebra.
|
|
In Foundations and Trends in Theoretical Computer Science, 2014.
|
|
|
|
"""
|
|
S = cwt_matrix(sketch_size, input_matrix.shape[0], seed)
|
|
return S.dot(input_matrix)
|