import numpy as np
from skimage.morphology import remove_small_objects, remove_small_holes

from skimage._shared import testing
from skimage._shared.testing import assert_array_equal, assert_equal
from skimage._shared._warnings import expected_warnings


test_image = np.array([[0, 0, 0, 1, 0],
                       [1, 1, 1, 0, 0],
                       [1, 1, 1, 0, 1]], bool)


def test_one_connectivity():
    expected = np.array([[0, 0, 0, 0, 0],
                         [1, 1, 1, 0, 0],
                         [1, 1, 1, 0, 0]], bool)
    observed = remove_small_objects(test_image, min_size=6)
    assert_array_equal(observed, expected)


def test_two_connectivity():
    expected = np.array([[0, 0, 0, 1, 0],
                         [1, 1, 1, 0, 0],
                         [1, 1, 1, 0, 0]], bool)
    observed = remove_small_objects(test_image, min_size=7, connectivity=2)
    assert_array_equal(observed, expected)


def test_in_place():
    image = test_image.copy()
    observed = remove_small_objects(image, min_size=6, in_place=True)
    assert_equal(observed is image, True,
                 "remove_small_objects in_place argument failed.")


def test_labeled_image():
    labeled_image = np.array([[2, 2, 2, 0, 1],
                              [2, 2, 2, 0, 1],
                              [2, 0, 0, 0, 0],
                              [0, 0, 3, 3, 3]], dtype=int)
    expected = np.array([[2, 2, 2, 0, 0],
                         [2, 2, 2, 0, 0],
                         [2, 0, 0, 0, 0],
                         [0, 0, 3, 3, 3]], dtype=int)
    observed = remove_small_objects(labeled_image, min_size=3)
    assert_array_equal(observed, expected)


def test_uint_image():
    labeled_image = np.array([[2, 2, 2, 0, 1],
                              [2, 2, 2, 0, 1],
                              [2, 0, 0, 0, 0],
                              [0, 0, 3, 3, 3]], dtype=np.uint8)
    expected = np.array([[2, 2, 2, 0, 0],
                         [2, 2, 2, 0, 0],
                         [2, 0, 0, 0, 0],
                         [0, 0, 3, 3, 3]], dtype=np.uint8)
    observed = remove_small_objects(labeled_image, min_size=3)
    assert_array_equal(observed, expected)


def test_single_label_warning():
    image = np.array([[0, 0, 0, 1, 0],
                      [1, 1, 1, 0, 0],
                      [1, 1, 1, 0, 0]], int)
    with expected_warnings(['use a boolean array?']):
        remove_small_objects(image, min_size=6)


def test_float_input():
    float_test = np.random.rand(5, 5)
    with testing.raises(TypeError):
        remove_small_objects(float_test)


def test_negative_input():
    negative_int = np.random.randint(-4, -1, size=(5, 5))
    with testing.raises(ValueError):
        remove_small_objects(negative_int)


test_holes_image = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                             [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                             [0, 1, 0, 0, 1, 1, 0, 0, 0, 0],
                             [0, 1, 1, 1, 0, 1, 0, 0, 0, 0],
                             [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                             [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                             [0, 0, 0, 0, 0, 0, 0, 1, 0, 1],
                             [0, 0, 0, 0, 0, 0, 0, 1, 1, 1]], np.bool_)


def test_one_connectivity_holes():
    expected = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1]], np.bool_)
    observed = remove_small_holes(test_holes_image, area_threshold=3)
    assert_array_equal(observed, expected)


def test_two_connectivity_holes():
    expected = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 0, 0, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 0, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1]], np.bool_)
    observed = remove_small_holes(test_holes_image, area_threshold=3,
                                  connectivity=2)
    assert_array_equal(observed, expected)


def test_in_place_holes():
    image = test_holes_image.copy()
    observed = remove_small_holes(image, area_threshold=3, in_place=True)
    assert_equal(observed is image, True,
                 "remove_small_holes in_place argument failed.")


def test_labeled_image_holes():
    labeled_holes_image = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                                    [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                                    [0, 1, 0, 0, 1, 1, 0, 0, 0, 0],
                                    [0, 1, 1, 1, 0, 1, 0, 0, 0, 0],
                                    [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 2, 2],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 0, 2],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 2, 2]],
                                   dtype=np.int_)
    expected = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1]], dtype=np.bool_)
    with expected_warnings(['returned as a boolean array']):
        observed = remove_small_holes(labeled_holes_image, area_threshold=3)
    assert_array_equal(observed, expected)


def test_uint_image_holes():
    labeled_holes_image = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                                    [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                                    [0, 1, 0, 0, 1, 1, 0, 0, 0, 0],
                                    [0, 1, 1, 1, 0, 1, 0, 0, 0, 0],
                                    [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 2, 2],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 0, 2],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 2, 2]],
                                   dtype=np.uint8)
    expected = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
                         [0, 0, 0, 0, 0, 0, 0, 1, 1, 1]], dtype=np.bool_)
    with expected_warnings(['returned as a boolean array']):
        observed = remove_small_holes(labeled_holes_image, area_threshold=3)
    assert_array_equal(observed, expected)


def test_label_warning_holes():
    labeled_holes_image = np.array([[0, 0, 0, 0, 0, 0, 1, 0, 0, 0],
                                    [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                                    [0, 1, 0, 0, 1, 1, 0, 0, 0, 0],
                                    [0, 1, 1, 1, 0, 1, 0, 0, 0, 0],
                                    [0, 1, 1, 1, 1, 1, 0, 0, 0, 0],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 2, 2],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 0, 2],
                                    [0, 0, 0, 0, 0, 0, 0, 2, 2, 2]],
                                   dtype=np.int_)
    with expected_warnings(['use a boolean array?']):
        remove_small_holes(labeled_holes_image, area_threshold=3)
    remove_small_holes(labeled_holes_image.astype(bool), area_threshold=3)


def test_float_input_holes():
    float_test = np.random.rand(5, 5)
    with testing.raises(TypeError):
        remove_small_holes(float_test)