# Copyright (c) 2006-2012 Filip Wasilewski # Copyright (c) 2012-2018 The PyWavelets Developers # # See COPYING for license details. """ Multilevel 1D and 2D Discrete Wavelet Transform and Inverse Discrete Wavelet Transform. """ from __future__ import division, print_function, absolute_import import numbers import warnings from itertools import product from copy import copy import numpy as np from ._extensions._pywt import Wavelet, Modes from ._extensions._dwt import dwt_max_level from ._dwt import dwt, idwt, dwt_coeff_len from ._multidim import dwt2, idwt2, dwtn, idwtn, _fix_coeffs from ._utils import _as_wavelet, _wavelets_per_axis, _modes_per_axis __all__ = ['wavedec', 'waverec', 'wavedec2', 'waverec2', 'wavedecn', 'waverecn', 'coeffs_to_array', 'array_to_coeffs', 'ravel_coeffs', 'unravel_coeffs', 'dwtn_max_level', 'wavedecn_size', 'wavedecn_shapes', 'fswavedecn', 'fswaverecn', 'FswavedecnResult'] def _check_level(sizes, dec_lens, level): if np.isscalar(sizes): sizes = (sizes, ) if np.isscalar(dec_lens): dec_lens = (dec_lens, ) max_level = np.min([dwt_max_level(s, d) for s, d in zip(sizes, dec_lens)]) if level is None: level = max_level elif level < 0: raise ValueError( "Level value of %d is too low . Minimum level is 0." % level) elif level > max_level: warnings.warn( ("Level value of {} is too high: all coefficients will experience " "boundary effects.").format(level)) return level def wavedec(data, wavelet, mode='symmetric', level=None, axis=-1): """ Multilevel 1D Discrete Wavelet Transform of data. Parameters ---------- data: array_like Input data wavelet : Wavelet object or name string Wavelet to use mode : str, optional Signal extension mode, see :ref:`Modes `. level : int, optional Decomposition level (must be >= 0). If level is None (default) then it will be calculated using the ``dwt_max_level`` function. axis: int, optional Axis over which to compute the DWT. If not given, the last axis is used. Returns ------- [cA_n, cD_n, cD_n-1, ..., cD2, cD1] : list Ordered list of coefficients arrays where ``n`` denotes the level of decomposition. The first element (``cA_n``) of the result is approximation coefficients array and the following elements (``cD_n`` - ``cD_1``) are details coefficients arrays. Examples -------- >>> from pywt import wavedec >>> coeffs = wavedec([1,2,3,4,5,6,7,8], 'db1', level=2) >>> cA2, cD2, cD1 = coeffs >>> cD1 array([-0.70710678, -0.70710678, -0.70710678, -0.70710678]) >>> cD2 array([-2., -2.]) >>> cA2 array([ 5., 13.]) """ data = np.asarray(data) wavelet = _as_wavelet(wavelet) try: axes_shape = data.shape[axis] except IndexError: raise ValueError("Axis greater than data dimensions") level = _check_level(axes_shape, wavelet.dec_len, level) coeffs_list = [] a = data for i in range(level): a, d = dwt(a, wavelet, mode, axis) coeffs_list.append(d) coeffs_list.append(a) coeffs_list.reverse() return coeffs_list def waverec(coeffs, wavelet, mode='symmetric', axis=-1): """ Multilevel 1D Inverse Discrete Wavelet Transform. Parameters ---------- coeffs : array_like Coefficients list [cAn, cDn, cDn-1, ..., cD2, cD1] wavelet : Wavelet object or name string Wavelet to use mode : str, optional Signal extension mode, see :ref:`Modes `. axis: int, optional Axis over which to compute the inverse DWT. If not given, the last axis is used. Notes ----- It may sometimes be desired to run ``waverec`` with some sets of coefficients omitted. This can best be done by setting the corresponding arrays to zero arrays of matching shape and dtype. Explicitly removing list entries or setting them to None is not supported. Specifically, to ignore detail coefficients at level 2, one could do:: coeffs[-2] == np.zeros_like(coeffs[-2]) Examples -------- >>> import pywt >>> coeffs = pywt.wavedec([1,2,3,4,5,6,7,8], 'db1', level=2) >>> pywt.waverec(coeffs, 'db1') array([ 1., 2., 3., 4., 5., 6., 7., 8.]) """ if not isinstance(coeffs, (list, tuple)): raise ValueError("Expected sequence of coefficient arrays.") if len(coeffs) < 1: raise ValueError( "Coefficient list too short (minimum 1 arrays required).") elif len(coeffs) == 1: # level 0 transform (just returns the approximation coefficients) return coeffs[0] a, ds = coeffs[0], coeffs[1:] for d in ds: if d is not None and not isinstance(d, np.ndarray): raise ValueError(( "Unexpected detail coefficient type: {}. Detail coefficients " "must be arrays as returned by wavedec. If you are using " "pywt.array_to_coeffs or pywt.unravel_coeffs, please specify " "output_format='wavedec'").format(type(d))) if (a is not None) and (d is not None): try: if a.shape[axis] == d.shape[axis] + 1: a = a[tuple(slice(s) for s in d.shape)] elif a.shape[axis] != d.shape[axis]: raise ValueError("coefficient shape mismatch") except IndexError: raise ValueError("Axis greater than coefficient dimensions") a = idwt(a, d, wavelet, mode, axis) return a def wavedec2(data, wavelet, mode='symmetric', level=None, axes=(-2, -1)): """ Multilevel 2D Discrete Wavelet Transform. Parameters ---------- data : ndarray 2D input data wavelet : Wavelet object or name string, or 2-tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. mode : str or 2-tuple of str, optional Signal extension mode, see :ref:`Modes `. This can also be a tuple containing a mode to apply along each axis in ``axes``. level : int, optional Decomposition level (must be >= 0). If level is None (default) then it will be calculated using the ``dwt_max_level`` function. axes : 2-tuple of ints, optional Axes over which to compute the DWT. Repeated elements are not allowed. Returns ------- [cAn, (cHn, cVn, cDn), ... (cH1, cV1, cD1)] : list Coefficients list. For user-specified ``axes``, ``cH*`` corresponds to ``axes[0]`` while ``cV*`` corresponds to ``axes[1]``. The first element returned is the approximation coefficients for the nth level of decomposition. Remaining elements are tuples of detail coefficients in descending order of decomposition level. (i.e. ``cH1`` are the horizontal detail coefficients at the first level) Examples -------- >>> import pywt >>> import numpy as np >>> coeffs = pywt.wavedec2(np.ones((4,4)), 'db1') >>> # Levels: >>> len(coeffs)-1 2 >>> pywt.waverec2(coeffs, 'db1') array([[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]]) """ data = np.asarray(data) if data.ndim < 2: raise ValueError("Expected input data to have at least 2 dimensions.") axes = tuple(axes) if len(axes) != 2: raise ValueError("Expected 2 axes") if len(axes) != len(set(axes)): raise ValueError("The axes passed to wavedec2 must be unique.") try: axes_sizes = [data.shape[ax] for ax in axes] except IndexError: raise ValueError("Axis greater than data dimensions") wavelets = _wavelets_per_axis(wavelet, axes) dec_lengths = [w.dec_len for w in wavelets] level = _check_level(axes_sizes, dec_lengths, level) coeffs_list = [] a = data for i in range(level): a, ds = dwt2(a, wavelet, mode, axes) coeffs_list.append(ds) coeffs_list.append(a) coeffs_list.reverse() return coeffs_list def waverec2(coeffs, wavelet, mode='symmetric', axes=(-2, -1)): """ Multilevel 2D Inverse Discrete Wavelet Transform. coeffs : list or tuple Coefficients list [cAn, (cHn, cVn, cDn), ... (cH1, cV1, cD1)] wavelet : Wavelet object or name string, or 2-tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. mode : str or 2-tuple of str, optional Signal extension mode, see :ref:`Modes `. This can also be a tuple containing a mode to apply along each axis in ``axes``. axes : 2-tuple of ints, optional Axes over which to compute the IDWT. Repeated elements are not allowed. Returns ------- 2D array of reconstructed data. Notes ----- It may sometimes be desired to run ``waverec2`` with some sets of coefficients omitted. This can best be done by setting the corresponding arrays to zero arrays of matching shape and dtype. Explicitly removing list or tuple entries or setting them to None is not supported. Specifically, to ignore all detail coefficients at level 2, one could do:: coeffs[-2] == tuple([np.zeros_like(v) for v in coeffs[-2]]) Examples -------- >>> import pywt >>> import numpy as np >>> coeffs = pywt.wavedec2(np.ones((4,4)), 'db1') >>> # Levels: >>> len(coeffs)-1 2 >>> pywt.waverec2(coeffs, 'db1') array([[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]]) """ if not isinstance(coeffs, (list, tuple)): raise ValueError("Expected sequence of coefficient arrays.") if len(axes) != len(set(axes)): raise ValueError("The axes passed to waverec2 must be unique.") if len(coeffs) < 1: raise ValueError( "Coefficient list too short (minimum 1 array required).") elif len(coeffs) == 1: # level 0 transform (just returns the approximation coefficients) return coeffs[0] a, ds = coeffs[0], coeffs[1:] a = np.asarray(a) for d in ds: if not isinstance(d, (list, tuple)) or len(d) != 3: raise ValueError(( "Unexpected detail coefficient type: {}. Detail coefficients " "must be a 3-tuple of arrays as returned by wavedec2. If you " "are using pywt.array_to_coeffs or pywt.unravel_coeffs, " "please specify output_format='wavedec2'").format(type(d))) d = tuple(np.asarray(coeff) if coeff is not None else None for coeff in d) d_shapes = (coeff.shape for coeff in d if coeff is not None) try: d_shape = next(d_shapes) except StopIteration: idxs = slice(None), slice(None) else: if not all(s == d_shape for s in d_shapes): raise ValueError("All detail shapes must be the same length.") idxs = tuple(slice(None, -1 if a_len == d_len + 1 else None) for a_len, d_len in zip(a.shape, d_shape)) a = idwt2((a[idxs], d), wavelet, mode, axes) return a def _prep_axes_wavedecn(shape, axes): if len(shape) < 1: raise ValueError("Expected at least 1D input data.") ndim = len(shape) if np.isscalar(axes): axes = (axes, ) if axes is None: axes = range(ndim) else: axes = tuple(axes) if len(axes) != len(set(axes)): raise ValueError("The axes passed to wavedecn must be unique.") try: axes_shapes = [shape[ax] for ax in axes] except IndexError: raise ValueError("Axis greater than data dimensions") ndim_transform = len(axes) return axes, axes_shapes, ndim_transform def wavedecn(data, wavelet, mode='symmetric', level=None, axes=None): """ Multilevel nD Discrete Wavelet Transform. Parameters ---------- data : ndarray nD input data wavelet : Wavelet object or name string, or tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. mode : str or tuple of str, optional Signal extension mode, see :ref:`Modes `. This can also be a tuple containing a mode to apply along each axis in ``axes``. level : int, optional Decomposition level (must be >= 0). If level is None (default) then it will be calculated using the ``dwt_max_level`` function. axes : sequence of ints, optional Axes over which to compute the DWT. Axes may not be repeated. The default is None, which means transform all axes (``axes = range(data.ndim)``). Returns ------- [cAn, {details_level_n}, ... {details_level_1}] : list Coefficients list. Coefficients are listed in descending order of decomposition level. ``cAn`` are the approximation coefficients at level ``n``. Each ``details_level_i`` element is a dictionary containing detail coefficients at level ``i`` of the decomposition. As a concrete example, a 3D decomposition would have the following set of keys in each ``details_level_i`` dictionary:: {'aad', 'ada', 'daa', 'add', 'dad', 'dda', 'ddd'} where the order of the characters in each key map to the specified ``axes``. Examples -------- >>> import numpy as np >>> from pywt import wavedecn, waverecn >>> coeffs = wavedecn(np.ones((4, 4, 4)), 'db1') >>> # Levels: >>> len(coeffs)-1 2 >>> waverecn(coeffs, 'db1') # doctest: +NORMALIZE_WHITESPACE array([[[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]], [[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]], [[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]], [[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]]]) """ data = np.asarray(data) axes, axes_shapes, ndim_transform = _prep_axes_wavedecn(data.shape, axes) wavelets = _wavelets_per_axis(wavelet, axes) dec_lengths = [w.dec_len for w in wavelets] level = _check_level(axes_shapes, dec_lengths, level) coeffs_list = [] a = data for i in range(level): coeffs = dwtn(a, wavelet, mode, axes) a = coeffs.pop('a' * ndim_transform) coeffs_list.append(coeffs) coeffs_list.append(a) coeffs_list.reverse() return coeffs_list def _match_coeff_dims(a_coeff, d_coeff_dict): # For each axis, compare the approximation coeff shape to one of the # stored detail coeffs and truncate the last element along the axis # if necessary. if a_coeff is None: return None if not d_coeff_dict: return a_coeff d_coeff = d_coeff_dict[next(iter(d_coeff_dict))] size_diffs = np.subtract(a_coeff.shape, d_coeff.shape) if np.any((size_diffs < 0) | (size_diffs > 1)): print(size_diffs) raise ValueError("incompatible coefficient array sizes") return a_coeff[tuple(slice(s) for s in d_coeff.shape)] def waverecn(coeffs, wavelet, mode='symmetric', axes=None): """ Multilevel nD Inverse Discrete Wavelet Transform. coeffs : array_like Coefficients list [cAn, {details_level_n}, ... {details_level_1}] wavelet : Wavelet object or name string, or tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. mode : str or tuple of str, optional Signal extension mode, see :ref:`Modes `. This can also be a tuple containing a mode to apply along each axis in ``axes``. axes : sequence of ints, optional Axes over which to compute the IDWT. Axes may not be repeated. Returns ------- nD array of reconstructed data. Notes ----- It may sometimes be desired to run ``waverecn`` with some sets of coefficients omitted. This can best be done by setting the corresponding arrays to zero arrays of matching shape and dtype. Explicitly removing list or dictionary entries or setting them to None is not supported. Specifically, to ignore all detail coefficients at level 2, one could do:: coeffs[-2] = {k: np.zeros_like(v) for k, v in coeffs[-2].items()} Examples -------- >>> import numpy as np >>> from pywt import wavedecn, waverecn >>> coeffs = wavedecn(np.ones((4, 4, 4)), 'db1') >>> # Levels: >>> len(coeffs)-1 2 >>> waverecn(coeffs, 'db1') # doctest: +NORMALIZE_WHITESPACE array([[[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]], [[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]], [[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]], [[ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.], [ 1., 1., 1., 1.]]]) """ if len(coeffs) < 1: raise ValueError( "Coefficient list too short (minimum 1 array required).") a, ds = coeffs[0], coeffs[1:] # this dictionary check must be prior to the call to _fix_coeffs if len(ds) > 0 and not all([isinstance(d, dict) for d in ds]): raise ValueError(( "Unexpected detail coefficient type: {}. Detail coefficients " "must be a dicionary of arrays as returned by wavedecn. If " "you are using pywt.array_to_coeffs or pywt.unravel_coeffs, " "please specify output_format='wavedecn'").format(type(ds[0]))) # Raise error for invalid key combinations ds = list(map(_fix_coeffs, ds)) if not ds: # level 0 transform (just returns the approximation coefficients) return coeffs[0] if a is None and not any(ds): raise ValueError( "At least one coefficient must contain a valid value.") coeff_ndims = [] if a is not None: a = np.asarray(a) coeff_ndims.append(a.ndim) for d in ds: coeff_ndims += [v.ndim for k, v in d.items()] # test that all coefficients have a matching number of dimensions unique_coeff_ndims = np.unique(coeff_ndims) if len(unique_coeff_ndims) == 1: ndim = unique_coeff_ndims[0] else: raise ValueError( "All coefficients must have a matching number of dimensions") if np.isscalar(axes): axes = (axes, ) if axes is None: axes = range(ndim) else: axes = tuple(axes) if len(axes) != len(set(axes)): raise ValueError("The axes passed to waverecn must be unique.") ndim_transform = len(axes) for idx, d in enumerate(ds): if a is None and not d: continue # The following if statement handles the case where the approximation # coefficient returned at the previous level may exceed the size of the # stored detail coefficients by 1 on any given axis. if idx > 0: a = _match_coeff_dims(a, d) d['a' * ndim_transform] = a a = idwtn(d, wavelet, mode, axes) return a def _coeffs_wavedec_to_wavedecn(coeffs): """Convert wavedec coefficients to the wavedecn format.""" if len(coeffs) == 0: return coeffs coeffs = copy(coeffs) for n in range(1, len(coeffs)): if coeffs[n] is None: continue if coeffs[n].ndim != 1: raise ValueError("expected a 1D coefficient array") coeffs[n] = dict(d=coeffs[n]) return coeffs def _coeffs_wavedec2_to_wavedecn(coeffs): """Convert wavedec2 coefficients to the wavedecn format.""" if len(coeffs) == 0: return coeffs coeffs = copy(coeffs) for n in range(1, len(coeffs)): if not isinstance(coeffs[n], (tuple, list)) or len(coeffs[n]) != 3: raise ValueError("expected a 3-tuple of detail coefficients") (da, ad, dd) = coeffs[n] if da is None or ad is None or dd is None: raise ValueError( "Expected numpy arrays of detail coefficients. Setting " "coefficients to None is not supported.") coeffs[n] = dict(ad=ad, da=da, dd=dd) return coeffs def _determine_coeff_array_shape(coeffs, axes): arr_shape = np.asarray(coeffs[0].shape) axes = np.asarray(axes) # axes that were transformed ndim_transform = len(axes) ncoeffs = coeffs[0].size for d in coeffs[1:]: arr_shape[axes] += np.asarray(d['d'*ndim_transform].shape)[axes] for k, v in d.items(): ncoeffs += v.size arr_shape = tuple(arr_shape.tolist()) # if the total number of coefficients doesn't equal the size of the array # then tight packing is not possible. is_tight_packing = (np.prod(arr_shape) == ncoeffs) return arr_shape, is_tight_packing def _prepare_coeffs_axes(coeffs, axes): """Helper function to check type of coeffs and axes. This code is used by both coeffs_to_array and ravel_coeffs. """ if not isinstance(coeffs, list) or len(coeffs) == 0: raise ValueError("input must be a list of coefficients from wavedecn") if coeffs[0] is None: raise ValueError("coeffs_to_array does not support missing " "coefficients.") if not isinstance(coeffs[0], np.ndarray): raise ValueError("first list element must be a numpy array") ndim = coeffs[0].ndim if len(coeffs) > 1: # convert wavedec or wavedec2 format coefficients to waverecn format if isinstance(coeffs[1], dict): pass elif isinstance(coeffs[1], np.ndarray): coeffs = _coeffs_wavedec_to_wavedecn(coeffs) elif isinstance(coeffs[1], (tuple, list)): coeffs = _coeffs_wavedec2_to_wavedecn(coeffs) else: raise ValueError("invalid coefficient list") if len(coeffs) == 1: # no detail coefficients were found return coeffs, axes, ndim, None # Determine the number of dimensions that were transformed via key length ndim_transform = len(list(coeffs[1].keys())[0]) if axes is None: if ndim_transform < ndim: raise ValueError( "coeffs corresponds to a DWT performed over only a subset of " "the axes. In this case, axes must be specified.") axes = np.arange(ndim) if len(axes) != ndim_transform: raise ValueError( "The length of axes doesn't match the number of dimensions " "transformed.") return coeffs, axes, ndim, ndim_transform def coeffs_to_array(coeffs, padding=0, axes=None): """ Arrange a wavelet coefficient list from ``wavedecn`` into a single array. Parameters ---------- coeffs : array-like dictionary of wavelet coefficients as returned by pywt.wavedecn padding : float or None, optional If None, raise an error if the coefficients cannot be tightly packed. axes : sequence of ints, optional Axes over which the DWT that created ``coeffs`` was performed. The default value of None corresponds to all axes. Returns ------- coeff_arr : array-like Wavelet transform coefficient array. coeff_slices : list List of slices corresponding to each coefficient. As a 2D example, ``coeff_arr[coeff_slices[1]['dd']]`` would extract the first level detail coefficients from ``coeff_arr``. See Also -------- array_to_coeffs : the inverse of coeffs_to_array Notes ----- Assume a 2D coefficient dictionary, c, from a two-level transform. Then all 2D coefficients will be stacked into a single larger 2D array as follows:: +---------------+---------------+-------------------------------+ | | | | | c[0] | c[1]['da'] | | | | | | +---------------+---------------+ c[2]['da'] | | | | | | c[1]['ad'] | c[1]['dd'] | | | | | | +---------------+---------------+ ------------------------------+ | | | | | | | | | | c[2]['ad'] | c[2]['dd'] | | | | | | | | | | +-------------------------------+-------------------------------+ Examples -------- >>> import pywt >>> cam = pywt.data.camera() >>> coeffs = pywt.wavedecn(cam, wavelet='db2', level=3) >>> arr, coeff_slices = pywt.coeffs_to_array(coeffs) """ coeffs, axes, ndim, ndim_transform = _prepare_coeffs_axes(coeffs, axes) # initialize with the approximation coefficients. a_coeffs = coeffs[0] a_shape = a_coeffs.shape if len(coeffs) == 1: # only a single approximation coefficient array was found return a_coeffs, [tuple([slice(None)] * ndim)] # determine size of output and if tight packing is possible arr_shape, is_tight_packing = _determine_coeff_array_shape(coeffs, axes) # preallocate output array if padding is None: if not is_tight_packing: raise ValueError("array coefficients cannot be tightly packed") coeff_arr = np.empty(arr_shape, dtype=a_coeffs.dtype) else: coeff_arr = np.full(arr_shape, padding, dtype=a_coeffs.dtype) a_slices = tuple([slice(s) for s in a_shape]) coeff_arr[a_slices] = a_coeffs # initialize list of coefficient slices coeff_slices = [] coeff_slices.append(a_slices) # loop over the detail cofficients, adding them to coeff_arr ds = coeffs[1:] for coeff_dict in ds: coeff_slices.append({}) # new dictionary for detail coefficients if np.any([d is None for d in coeff_dict.values()]): raise ValueError("coeffs_to_array does not support missing " "coefficients.") d_shape = coeff_dict['d' * ndim_transform].shape for key in coeff_dict.keys(): d = coeff_dict[key] slice_array = [slice(None), ] * ndim for i, let in enumerate(key): ax_i = axes[i] # axis corresponding to this transform index if let == 'a': slice_array[ax_i] = slice(d.shape[ax_i]) elif let == 'd': slice_array[ax_i] = slice(a_shape[ax_i], a_shape[ax_i] + d.shape[ax_i]) else: raise ValueError("unexpected letter: {}".format(let)) slice_array = tuple(slice_array) coeff_arr[slice_array] = d coeff_slices[-1][key] = slice_array a_shape = [a_shape[n] + d_shape[n] for n in range(ndim)] return coeff_arr, coeff_slices def array_to_coeffs(arr, coeff_slices, output_format='wavedecn'): """ Convert a combined array of coefficients back to a list compatible with ``waverecn``. Parameters ---------- arr : array-like An array containing all wavelet coefficients. This should have been generated via ``coeffs_to_array``. coeff_slices : list of tuples List of slices corresponding to each coefficient as obtained from ``array_to_coeffs``. output_format : {'wavedec', 'wavedec2', 'wavedecn'} Make the form of the coefficients compatible with this type of multilevel transform. Returns ------- coeffs: array-like Wavelet transform coefficient array. See Also -------- coeffs_to_array : the inverse of array_to_coeffs Notes ----- A single large array containing all coefficients will have subsets stored, into a ``waverecn`` list, c, as indicated below:: +---------------+---------------+-------------------------------+ | | | | | c[0] | c[1]['da'] | | | | | | +---------------+---------------+ c[2]['da'] | | | | | | c[1]['ad'] | c[1]['dd'] | | | | | | +---------------+---------------+ ------------------------------+ | | | | | | | | | | c[2]['ad'] | c[2]['dd'] | | | | | | | | | | +-------------------------------+-------------------------------+ Examples -------- >>> import pywt >>> from numpy.testing import assert_array_almost_equal >>> cam = pywt.data.camera() >>> coeffs = pywt.wavedecn(cam, wavelet='db2', level=3) >>> arr, coeff_slices = pywt.coeffs_to_array(coeffs) >>> coeffs_from_arr = pywt.array_to_coeffs(arr, coeff_slices, ... output_format='wavedecn') >>> cam_recon = pywt.waverecn(coeffs_from_arr, wavelet='db2') >>> assert_array_almost_equal(cam, cam_recon) """ arr = np.asarray(arr) coeffs = [] if len(coeff_slices) == 0: raise ValueError("empty list of coefficient slices") else: coeffs.append(arr[coeff_slices[0]]) # difference coefficients at each level for n in range(1, len(coeff_slices)): if output_format == 'wavedec': d = arr[coeff_slices[n]['d']] elif output_format == 'wavedec2': d = (arr[coeff_slices[n]['da']], arr[coeff_slices[n]['ad']], arr[coeff_slices[n]['dd']]) elif output_format == 'wavedecn': d = {} for k, v in coeff_slices[n].items(): d[k] = arr[v] else: raise ValueError( "Unrecognized output format: {}".format(output_format)) coeffs.append(d) return coeffs def wavedecn_shapes(shape, wavelet, mode='symmetric', level=None, axes=None): """Subband shapes for a multilevel nD discrete wavelet transform. Parameters ---------- shape : sequence of ints The shape of the data to be transformed. wavelet : Wavelet object or name string, or tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. mode : str or tuple of str, optional Signal extension mode, see :ref:`Modes `. This can also be a tuple containing a mode to apply along each axis in ``axes``. level : int, optional Decomposition level (must be >= 0). If level is None (default) then it will be calculated using the ``dwt_max_level`` function. axes : sequence of ints, optional Axes over which to compute the DWT. Axes may not be repeated. The default is None, which means transform all axes (``axes = range(data.ndim)``). Returns ------- shapes : [cAn, {details_level_n}, ... {details_level_1}] : list Coefficients shape list. Mirrors the output of ``wavedecn``, except it contains only the shapes of the coefficient arrays rather than the arrays themselves. Examples -------- >>> import pywt >>> pywt.wavedecn_shapes((64, 32), wavelet='db2', level=3, axes=(0, )) [(10, 32), {'d': (10, 32)}, {'d': (18, 32)}, {'d': (33, 32)}] """ axes, axes_shapes, ndim_transform = _prep_axes_wavedecn(shape, axes) wavelets = _wavelets_per_axis(wavelet, axes) modes = _modes_per_axis(mode, axes) dec_lengths = [w.dec_len for w in wavelets] level = _check_level(min(axes_shapes), max(dec_lengths), level) shapes = [] for i in range(level): detail_keys = [''.join(c) for c in product('ad', repeat=len(axes))] new_shapes = {k: list(shape) for k in detail_keys} for axis, wav, mode in zip(axes, wavelets, modes): s = dwt_coeff_len(shape[axis], filter_len=wav.dec_len, mode=mode) for k in detail_keys: new_shapes[k][axis] = s for k, v in new_shapes.items(): new_shapes[k] = tuple(v) shapes.append(new_shapes) shape = new_shapes.pop('a' * ndim_transform) shapes.append(shape) shapes.reverse() return shapes def wavedecn_size(shapes): """Compute the total number of wavedecn coefficients. Parameters ---------- shapes : list of coefficient shapes A set of coefficient shapes as returned by ``wavedecn_shapes``. Alternatively, the user can specify a set of coefficients as returned by ``wavedecn``. Returns ------- size : int The total number of coefficients. Examples -------- >>> import numpy as np >>> import pywt >>> data_shape = (64, 32) >>> shapes = pywt.wavedecn_shapes(data_shape, 'db2', mode='periodization') >>> pywt.wavedecn_size(shapes) 2048 >>> coeffs = pywt.wavedecn(np.ones(data_shape), 'sym4', mode='symmetric') >>> pywt.wavedecn_size(coeffs) 3087 """ def _size(x): """Size corresponding to ``x`` as either a shape tuple or ndarray.""" if isinstance(x, np.ndarray): return x.size else: return np.prod(x) ncoeffs = _size(shapes[0]) for d in shapes[1:]: for k, v in d.items(): if v is None: raise ValueError( "Setting coefficient arrays to None is not supported.") ncoeffs += _size(v) return ncoeffs def dwtn_max_level(shape, wavelet, axes=None): """Compute the maximum level of decomposition for n-dimensional data. This returns the maximum number of levels of decomposition suitable for use with ``wavedec``, ``wavedec2`` or ``wavedecn``. Parameters ---------- shape : sequence of ints Input data shape. wavelet : Wavelet object or name string, or tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. axes : sequence of ints, optional Axes over which to compute the DWT. Axes may not be repeated. Returns ------- level : int Maximum level. Notes ----- The level returned is the smallest ``dwt_max_level`` over all axes. Examples -------- >>> import pywt >>> pywt.dwtn_max_level((64, 32), 'db2') 3 """ # Determine the axes and shape for the transform axes, axes_shapes, ndim_transform = _prep_axes_wavedecn(shape, axes) # initialize a Wavelet object per (transformed) axis wavelets = _wavelets_per_axis(wavelet, axes) # maximum level of decomposition per axis max_levels = [dwt_max_level(n, wav.dec_len) for n, wav in zip(axes_shapes, wavelets)] return min(max_levels) def ravel_coeffs(coeffs, axes=None): """Ravel a set of multilevel wavelet coefficients into a single 1D array. Parameters ---------- coeffs : array-like A list of multilevel wavelet coefficients as returned by ``wavedec``, ``wavedec2`` or ``wavedecn``. This function is also compatible with the output of ``swt``, ``swt2`` and ``swtn`` if those functions were called with ``trim_approx=True``. axes : sequence of ints, optional Axes over which the DWT that created ``coeffs`` was performed. The default value of None corresponds to all axes. Returns ------- coeff_arr : array-like Wavelet transform coefficient array. All coefficients have been concatenated into a single array. coeff_slices : list List of slices corresponding to each coefficient. As a 2D example, ``coeff_arr[coeff_slices[1]['dd']]`` would extract the first level detail coefficients from ``coeff_arr``. coeff_shapes : list List of shapes corresponding to each coefficient. For example, in 2D, ``coeff_shapes[1]['dd']`` would contain the original shape of the first level detail coefficients array. See Also -------- unravel_coeffs : the inverse of ravel_coeffs Examples -------- >>> import pywt >>> cam = pywt.data.camera() >>> coeffs = pywt.wavedecn(cam, wavelet='db2', level=3) >>> arr, coeff_slices, coeff_shapes = pywt.ravel_coeffs(coeffs) """ coeffs, axes, ndim, ndim_transform = _prepare_coeffs_axes(coeffs, axes) # initialize with the approximation coefficients. a_coeffs = coeffs[0] a_size = a_coeffs.size if len(coeffs) == 1: # only a single approximation coefficient array was found return a_coeffs.ravel(), [slice(a_size), ], [a_coeffs.shape, ] # preallocate output array arr_size = wavedecn_size(coeffs) coeff_arr = np.empty((arr_size, ), dtype=a_coeffs.dtype) a_slice = slice(a_size) coeff_arr[a_slice] = a_coeffs.ravel() # initialize list of coefficient slices coeff_slices = [] coeff_shapes = [] coeff_slices.append(a_slice) coeff_shapes.append(coeffs[0].shape) # loop over the detail cofficients, embedding them in coeff_arr ds = coeffs[1:] offset = a_size for coeff_dict in ds: # new dictionaries for detail coefficient slices and shapes coeff_slices.append({}) coeff_shapes.append({}) if np.any([d is None for d in coeff_dict.values()]): raise ValueError("coeffs_to_array does not support missing " "coefficients.") # sort to make sure key order is consistent across Python versions keys = sorted(coeff_dict.keys()) for key in keys: d = coeff_dict[key] sl = slice(offset, offset + d.size) offset += d.size coeff_arr[sl] = d.ravel() coeff_slices[-1][key] = sl coeff_shapes[-1][key] = d.shape return coeff_arr, coeff_slices, coeff_shapes def unravel_coeffs(arr, coeff_slices, coeff_shapes, output_format='wavedecn'): """Unravel a raveled array of multilevel wavelet coefficients. Parameters ---------- arr : array-like An array containing all wavelet coefficients. This should have been generated by applying ``ravel_coeffs`` to the output of ``wavedec``, ``wavedec2`` or ``wavedecn`` (or via ``swt``, ``swt2`` or ``swtn`` with ``trim_approx=True``). coeff_slices : list of tuples List of slices corresponding to each coefficient as obtained from ``ravel_coeffs``. coeff_shapes : list of tuples List of shapes corresponding to each coefficient as obtained from ``ravel_coeffs``. output_format : {'wavedec', 'wavedec2', 'wavedecn', 'swt', 'swt2', 'swtn'}, optional Make the form of the unraveled coefficients compatible with this type of multilevel transform. The default is ``'wavedecn'``. Returns ------- coeffs: list List of wavelet transform coefficients. The specific format of the list elements is determined by ``output_format``. See Also -------- ravel_coeffs : the inverse of unravel_coeffs Examples -------- >>> import pywt >>> from numpy.testing import assert_array_almost_equal >>> cam = pywt.data.camera() >>> coeffs = pywt.wavedecn(cam, wavelet='db2', level=3) >>> arr, coeff_slices, coeff_shapes = pywt.ravel_coeffs(coeffs) >>> coeffs_from_arr = pywt.unravel_coeffs(arr, coeff_slices, coeff_shapes, ... output_format='wavedecn') >>> cam_recon = pywt.waverecn(coeffs_from_arr, wavelet='db2') >>> assert_array_almost_equal(cam, cam_recon) """ arr = np.asarray(arr) coeffs = [] if len(coeff_slices) == 0: raise ValueError("empty list of coefficient slices") elif len(coeff_shapes) == 0: raise ValueError("empty list of coefficient shapes") elif len(coeff_shapes) != len(coeff_slices): raise ValueError("coeff_shapes and coeff_slices have unequal length") else: coeffs.append(arr[coeff_slices[0]].reshape(coeff_shapes[0])) # difference coefficients at each level for n in range(1, len(coeff_slices)): slice_dict = coeff_slices[n] shape_dict = coeff_shapes[n] if output_format in ['wavedec', 'swt']: d = arr[slice_dict['d']].reshape(shape_dict['d']) elif output_format in ['wavedec2', 'swt2']: d = (arr[slice_dict['da']].reshape(shape_dict['da']), arr[slice_dict['ad']].reshape(shape_dict['ad']), arr[slice_dict['dd']].reshape(shape_dict['dd'])) elif output_format in ['wavedecn', 'swtn']: d = {} for k, v in coeff_slices[n].items(): d[k] = arr[v].reshape(shape_dict[k]) else: raise ValueError( "Unrecognized output format: {}".format(output_format)) coeffs.append(d) return coeffs def _check_fswavedecn_axes(data, axes): """Axes checks common to fswavedecn, fswaverecn.""" if len(axes) != len(set(axes)): raise ValueError("The axes passed to fswavedecn must be unique.") try: [data.shape[ax] for ax in axes] except IndexError: raise ValueError("Axis greater than data dimensions") class FswavedecnResult(object): """Object representing fully separable wavelet transform coefficients. Parameters ---------- coeffs : ndarray The coefficient array. coeff_slices : list List of slices corresponding to each detail or approximation coefficient array. wavelets : list of pywt.DiscreteWavelet objects The wavelets used. Will be a list with length equal to ``len(axes)``. mode_enums : list of int The border modes used. Will be a list with length equal to ``len(axes)``. axes : tuple of int The set of axes over which the transform was performed. """ def __init__(self, coeffs, coeff_slices, wavelets, mode_enums, axes): self._coeffs = coeffs self._coeff_slices = coeff_slices self._axes = axes if not np.all(isinstance(w, Wavelet) for w in wavelets): raise ValueError( "wavelets must contain pywt.Wavelet objects") self._wavelets = wavelets if not np.all(isinstance(m, int) for m in mode_enums): raise ValueError( "mode_enums must be integers") self._mode_enums = mode_enums @property def coeffs(self): """ndarray: All coefficients stacked into a single array.""" return self._coeffs @coeffs.setter def coeffs(self, c): if c.shape != self._coeffs.shape: raise ValueError("new coefficient array must match the existing " "coefficient shape") self._coeffs = c @property def coeff_slices(self): """List: List of coefficient slices.""" return self._coeff_slices @property def ndim(self): """int: Number of data dimensions.""" return self.coeffs.ndim @property def ndim_transform(self): """int: Number of axes transformed.""" return len(self.axes) @property def axes(self): """List of str: The axes the transform was performed along.""" return self._axes @property def levels(self): """List of int: Levels of decomposition along each transformed axis.""" return [len(s) - 1 for s in self.coeff_slices] @property def wavelets(self): """List of pywt.DiscreteWavelet: wavelet for each transformed axis.""" return self._wavelets @property def wavelet_names(self): """List of pywt.DiscreteWavelet: wavelet for each transformed axis.""" return [w.name for w in self._wavelets] @property def modes(self): """List of str: The border mode used along each transformed axis.""" names_dict = {getattr(Modes, mode): mode for mode in Modes.modes} return [names_dict[m] for m in self._mode_enums] def _get_coef_sl(self, levels): sl = [slice(None), ] * self.ndim for n, (ax, lev) in enumerate(zip(self.axes, levels)): sl[ax] = self.coeff_slices[n][lev] return tuple(sl) @property def approx(self): """ndarray: The approximation coefficients.""" sl = self._get_coef_sl((0, )*self.ndim) return self._coeffs[sl] @approx.setter def approx(self, a): sl = self._get_coef_sl((0, )*self.ndim) if self._coeffs[sl].shape != a.shape: raise ValueError( "x does not match the shape of the requested coefficient") self._coeffs[sl] = a def _validate_index(self, levels): levels = tuple(levels) if len(levels) != len(self.axes): raise ValueError( "levels must match the number of transformed axes") # check that all elements are non-negative integers if (not np.all([isinstance(lev, numbers.Number) for lev in levels]) or np.any(np.asarray(levels) % 1 > 0) or np.any([lev < 0 for lev in levels])): raise ValueError("Index must be a tuple of non-negative integers") # convert integer-valued floats to int levels = tuple([int(lev) for lev in levels]) # check for out of range levels if np.any([lev > maxlev for lev, maxlev in zip(levels, self.levels)]): raise ValueError( "Specified indices exceed the number of transform levels.") def __getitem__(self, levels): """Retrieve a coefficient subband. Parameters ---------- levels : tuple of int The number of degrees of decomposition along each transformed axis. """ self._validate_index(levels) sl = self._get_coef_sl(levels) return self._coeffs[sl] def __setitem__(self, levels, x): """Assign values to a coefficient subband. Parameters ---------- levels : tuple of int The number of degrees of decomposition along each transformed axis. x : ndarray The data corresponding to assign. It must match the expected shape and dtype of the specified subband. """ self._validate_index(levels) sl = self._get_coef_sl(levels) current_dtype = self._coeffs[sl].dtype if self._coeffs[sl].shape != x.shape: raise ValueError( "x does not match the shape of the requested coefficient") if x.dtype != current_dtype: warnings.warn("dtype mismatch: converting the provided array to" "dtype {}".format(current_dtype)) self._coeffs[sl] = x def detail_keys(self): """Return a list of all detail coefficient keys. Returns ------- keys : list of str List of all detail coefficient keys. """ keys = list(product(*(range(l+1) for l in self.levels))) keys.remove((0, )*len(self.axes)) return sorted(keys) def fswavedecn(data, wavelet, mode='symmetric', levels=None, axes=None): """Fully Separable Wavelet Decomposition. This is a variant of the multilevel discrete wavelet transform where all levels of decomposition are performed along a single axis prior to moving onto the next axis. Unlike in ``wavedecn``, the number of levels of decomposition are not required to be the same along each axis which can be a benefit for anisotropic data. Parameters ---------- data: array_like Input data wavelet : Wavelet object or name string, or tuple of wavelets Wavelet to use. This can also be a tuple containing a wavelet to apply along each axis in ``axes``. mode : str or tuple of str, optional Signal extension mode, see :ref:`Modes `. This can also be a tuple containing a mode to apply along each axis in ``axes``. levels : int or sequence of ints, optional Decomposition levels along each axis (must be >= 0). If an integer is provided, the same number of levels are used for all axes. If ``levels`` is None (default), ``dwt_max_level`` will be used to compute the maximum number of levels possible for each axis. axes : sequence of ints, optional Axes over which to compute the transform. Axes may not be repeated. The default is to transform along all axes. Returns ------- fswavedecn_result : FswavedecnResult object Contains the wavelet coefficients, slice objects to allow obtaining the coefficients per detail or approximation level, and more. See ``FswavedecnResult`` for details. Examples -------- >>> from pywt import fswavedecn >>> fs_result = fswavedecn(np.ones((32, 32)), 'sym2', levels=(1, 3)) >>> print(fs_result.detail_keys()) [(0, 1), (0, 2), (0, 3), (1, 0), (1, 1), (1, 2), (1, 3)] >>> approx_coeffs = fs_result.approx >>> detail_1_2 = fs_result[(1, 2)] Notes ----- This transformation has been variously referred to as the (fully) separable wavelet transform (e.g. refs [1]_, [3]_), the tensor-product wavelet ([2]_) or the hyperbolic wavelet transform ([4]_). It is well suited to data with anisotropic smoothness. In [2]_ it was demonstrated that fully separable transform performs at least as well as the DWT for image compression. Computation time is a factor 2 larger than that for the DWT. See Also -------- fswaverecn : inverse of fswavedecn References ---------- .. [1] PH Westerink. Subband Coding of Images. Ph.D. dissertation, Dept. Elect. Eng., Inf. Theory Group, Delft Univ. Technol., Delft, The Netherlands, 1989. (see Section 2.3) http://resolver.tudelft.nl/uuid:a4d195c3-1f89-4d66-913d-db9af0969509 .. [2] CP Rosiene and TQ Nguyen. Tensor-product wavelet vs. Mallat decomposition: A comparative analysis, in Proc. IEEE Int. Symp. Circuits and Systems, Orlando, FL, Jun. 1999, pp. 431-434. .. [3] V Velisavljevic, B Beferull-Lozano, M Vetterli and PL Dragotti. Directionlets: Anisotropic Multidirectional Representation With Separable Filtering. IEEE Transactions on Image Processing, Vol. 15, No. 7, July 2006. .. [4] RA DeVore, SV Konyagin and VN Temlyakov. "Hyperbolic wavelet approximation," Constr. Approx. 14 (1998), 1-26. """ data = np.asarray(data) if axes is None: axes = tuple(np.arange(data.ndim)) _check_fswavedecn_axes(data, axes) if levels is None or np.isscalar(levels): levels = [levels, ] * len(axes) if len(levels) != len(axes): raise ValueError("levels must match the length of the axes list") modes = _modes_per_axis(mode, axes) wavelets = _wavelets_per_axis(wavelet, axes) coeff_slices = [slice(None), ] * len(axes) coeffs_arr = data for ax_count, (ax, lev, wav, mode) in enumerate( zip(axes, levels, wavelets, modes)): coeffs = wavedec(coeffs_arr, wav, mode=mode, level=lev, axis=ax) # Slice objects for accessing coefficient subsets. # These can be used to access specific detail coefficient arrays # (e.g. as needed for inverse transformation via fswaverecn). c_shapes = [c.shape[ax] for c in coeffs] c_offsets = np.cumsum([0, ] + c_shapes) coeff_slices[ax_count] = [ slice(c_offsets[d], c_offsets[d+1]) for d in range(len(c_shapes))] # stack the coefficients from all levels into a single array coeffs_arr = np.concatenate(coeffs, axis=ax) return FswavedecnResult(coeffs_arr, coeff_slices, wavelets, modes, axes) def fswaverecn(fswavedecn_result): """Fully Separable Inverse Wavelet Reconstruction. Parameters ---------- fswavedecn_result : FswavedecnResult object FswavedecnResult object from ``fswavedecn``. Returns ------- reconstructed : ndarray Array of reconstructed data. Notes ----- This transformation has been variously referred to as the (fully) separable wavelet transform (e.g. refs [1]_, [3]_), the tensor-product wavelet ([2]_) or the hyperbolic wavelet transform ([4]_). It is well suited to data with anisotropic smoothness. In [2]_ it was demonstrated that the fully separable transform performs at least as well as the DWT for image compression. Computation time is a factor 2 larger than that for the DWT. See Also -------- fswavedecn : inverse of fswaverecn References ---------- .. [1] PH Westerink. Subband Coding of Images. Ph.D. dissertation, Dept. Elect. Eng., Inf. Theory Group, Delft Univ. Technol., Delft, The Netherlands, 1989. (see Section 2.3) http://resolver.tudelft.nl/uuid:a4d195c3-1f89-4d66-913d-db9af0969509 .. [2] CP Rosiene and TQ Nguyen. Tensor-product wavelet vs. Mallat decomposition: A comparative analysis, in Proc. IEEE Int. Symp. Circuits and Systems, Orlando, FL, Jun. 1999, pp. 431-434. .. [3] V Velisavljevic, B Beferull-Lozano, M Vetterli and PL Dragotti. Directionlets: Anisotropic Multidirectional Representation With Separable Filtering. IEEE Transactions on Image Processing, Vol. 15, No. 7, July 2006. .. [4] RA DeVore, SV Konyagin and VN Temlyakov. "Hyperbolic wavelet approximation," Constr. Approx. 14 (1998), 1-26. """ coeffs_arr = fswavedecn_result.coeffs coeff_slices = fswavedecn_result.coeff_slices axes = fswavedecn_result.axes modes = fswavedecn_result.modes wavelets = fswavedecn_result.wavelets _check_fswavedecn_axes(coeffs_arr, axes) if len(axes) != len(coeff_slices): raise ValueError("dimension mismatch") arr = coeffs_arr csl = [slice(None), ] * arr.ndim # for ax_count, (ax, wav, mode) in reversed( # list(enumerate(zip(axes, wavelets, modes)))): for ax_count, (ax, wav, mode) in enumerate(zip(axes, wavelets, modes)): coeffs = [] for sl in coeff_slices[ax_count]: csl[ax] = sl coeffs.append(arr[tuple(csl)]) csl[ax] = slice(None) arr = waverec(coeffs, wav, mode=mode, axis=ax) return arr