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Batuhan Berk Başoğlu 2020-10-02 21:26:03 -04:00
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import pytest
import numpy as np
from numpy.testing import (
assert_, assert_equal, assert_array_equal, assert_almost_equal,
assert_array_almost_equal, assert_raises, assert_raises_regex,
assert_warns
)
from numpy.lib.index_tricks import (
mgrid, ogrid, ndenumerate, fill_diagonal, diag_indices, diag_indices_from,
index_exp, ndindex, r_, s_, ix_
)
class TestRavelUnravelIndex:
def test_basic(self):
assert_equal(np.unravel_index(2, (2, 2)), (1, 0))
# test backwards compatibility with older dims
# keyword argument; see Issue #10586
with assert_warns(DeprecationWarning):
# we should achieve the correct result
# AND raise the appropriate warning
# when using older "dims" kw argument
assert_equal(np.unravel_index(indices=2,
dims=(2, 2)),
(1, 0))
# test that new shape argument works properly
assert_equal(np.unravel_index(indices=2,
shape=(2, 2)),
(1, 0))
# test that an invalid second keyword argument
# is properly handled
with assert_raises(TypeError):
np.unravel_index(indices=2, hape=(2, 2))
with assert_raises(TypeError):
np.unravel_index(2, hape=(2, 2))
with assert_raises(TypeError):
np.unravel_index(254, ims=(17, 94))
assert_equal(np.ravel_multi_index((1, 0), (2, 2)), 2)
assert_equal(np.unravel_index(254, (17, 94)), (2, 66))
assert_equal(np.ravel_multi_index((2, 66), (17, 94)), 254)
assert_raises(ValueError, np.unravel_index, -1, (2, 2))
assert_raises(TypeError, np.unravel_index, 0.5, (2, 2))
assert_raises(ValueError, np.unravel_index, 4, (2, 2))
assert_raises(ValueError, np.ravel_multi_index, (-3, 1), (2, 2))
assert_raises(ValueError, np.ravel_multi_index, (2, 1), (2, 2))
assert_raises(ValueError, np.ravel_multi_index, (0, -3), (2, 2))
assert_raises(ValueError, np.ravel_multi_index, (0, 2), (2, 2))
assert_raises(TypeError, np.ravel_multi_index, (0.1, 0.), (2, 2))
assert_equal(np.unravel_index((2*3 + 1)*6 + 4, (4, 3, 6)), [2, 1, 4])
assert_equal(
np.ravel_multi_index([2, 1, 4], (4, 3, 6)), (2*3 + 1)*6 + 4)
arr = np.array([[3, 6, 6], [4, 5, 1]])
assert_equal(np.ravel_multi_index(arr, (7, 6)), [22, 41, 37])
assert_equal(
np.ravel_multi_index(arr, (7, 6), order='F'), [31, 41, 13])
assert_equal(
np.ravel_multi_index(arr, (4, 6), mode='clip'), [22, 23, 19])
assert_equal(np.ravel_multi_index(arr, (4, 4), mode=('clip', 'wrap')),
[12, 13, 13])
assert_equal(np.ravel_multi_index((3, 1, 4, 1), (6, 7, 8, 9)), 1621)
assert_equal(np.unravel_index(np.array([22, 41, 37]), (7, 6)),
[[3, 6, 6], [4, 5, 1]])
assert_equal(
np.unravel_index(np.array([31, 41, 13]), (7, 6), order='F'),
[[3, 6, 6], [4, 5, 1]])
assert_equal(np.unravel_index(1621, (6, 7, 8, 9)), [3, 1, 4, 1])
def test_empty_indices(self):
msg1 = 'indices must be integral: the provided empty sequence was'
msg2 = 'only int indices permitted'
assert_raises_regex(TypeError, msg1, np.unravel_index, [], (10, 3, 5))
assert_raises_regex(TypeError, msg1, np.unravel_index, (), (10, 3, 5))
assert_raises_regex(TypeError, msg2, np.unravel_index, np.array([]),
(10, 3, 5))
assert_equal(np.unravel_index(np.array([],dtype=int), (10, 3, 5)),
[[], [], []])
assert_raises_regex(TypeError, msg1, np.ravel_multi_index, ([], []),
(10, 3))
assert_raises_regex(TypeError, msg1, np.ravel_multi_index, ([], ['abc']),
(10, 3))
assert_raises_regex(TypeError, msg2, np.ravel_multi_index,
(np.array([]), np.array([])), (5, 3))
assert_equal(np.ravel_multi_index(
(np.array([], dtype=int), np.array([], dtype=int)), (5, 3)), [])
assert_equal(np.ravel_multi_index(np.array([[], []], dtype=int),
(5, 3)), [])
def test_big_indices(self):
# ravel_multi_index for big indices (issue #7546)
if np.intp == np.int64:
arr = ([1, 29], [3, 5], [3, 117], [19, 2],
[2379, 1284], [2, 2], [0, 1])
assert_equal(
np.ravel_multi_index(arr, (41, 7, 120, 36, 2706, 8, 6)),
[5627771580, 117259570957])
# test unravel_index for big indices (issue #9538)
assert_raises(ValueError, np.unravel_index, 1, (2**32-1, 2**31+1))
# test overflow checking for too big array (issue #7546)
dummy_arr = ([0],[0])
half_max = np.iinfo(np.intp).max // 2
assert_equal(
np.ravel_multi_index(dummy_arr, (half_max, 2)), [0])
assert_raises(ValueError,
np.ravel_multi_index, dummy_arr, (half_max+1, 2))
assert_equal(
np.ravel_multi_index(dummy_arr, (half_max, 2), order='F'), [0])
assert_raises(ValueError,
np.ravel_multi_index, dummy_arr, (half_max+1, 2), order='F')
def test_dtypes(self):
# Test with different data types
for dtype in [np.int16, np.uint16, np.int32,
np.uint32, np.int64, np.uint64]:
coords = np.array(
[[1, 0, 1, 2, 3, 4], [1, 6, 1, 3, 2, 0]], dtype=dtype)
shape = (5, 8)
uncoords = 8*coords[0]+coords[1]
assert_equal(np.ravel_multi_index(coords, shape), uncoords)
assert_equal(coords, np.unravel_index(uncoords, shape))
uncoords = coords[0]+5*coords[1]
assert_equal(
np.ravel_multi_index(coords, shape, order='F'), uncoords)
assert_equal(coords, np.unravel_index(uncoords, shape, order='F'))
coords = np.array(
[[1, 0, 1, 2, 3, 4], [1, 6, 1, 3, 2, 0], [1, 3, 1, 0, 9, 5]],
dtype=dtype)
shape = (5, 8, 10)
uncoords = 10*(8*coords[0]+coords[1])+coords[2]
assert_equal(np.ravel_multi_index(coords, shape), uncoords)
assert_equal(coords, np.unravel_index(uncoords, shape))
uncoords = coords[0]+5*(coords[1]+8*coords[2])
assert_equal(
np.ravel_multi_index(coords, shape, order='F'), uncoords)
assert_equal(coords, np.unravel_index(uncoords, shape, order='F'))
def test_clipmodes(self):
# Test clipmodes
assert_equal(
np.ravel_multi_index([5, 1, -1, 2], (4, 3, 7, 12), mode='wrap'),
np.ravel_multi_index([1, 1, 6, 2], (4, 3, 7, 12)))
assert_equal(np.ravel_multi_index([5, 1, -1, 2], (4, 3, 7, 12),
mode=(
'wrap', 'raise', 'clip', 'raise')),
np.ravel_multi_index([1, 1, 0, 2], (4, 3, 7, 12)))
assert_raises(
ValueError, np.ravel_multi_index, [5, 1, -1, 2], (4, 3, 7, 12))
def test_writeability(self):
# See gh-7269
x, y = np.unravel_index([1, 2, 3], (4, 5))
assert_(x.flags.writeable)
assert_(y.flags.writeable)
def test_0d(self):
# gh-580
x = np.unravel_index(0, ())
assert_equal(x, ())
assert_raises_regex(ValueError, "0d array", np.unravel_index, [0], ())
assert_raises_regex(
ValueError, "out of bounds", np.unravel_index, [1], ())
@pytest.mark.parametrize("mode", ["clip", "wrap", "raise"])
def test_empty_array_ravel(self, mode):
res = np.ravel_multi_index(
np.zeros((3, 0), dtype=np.intp), (2, 1, 0), mode=mode)
assert(res.shape == (0,))
with assert_raises(ValueError):
np.ravel_multi_index(
np.zeros((3, 1), dtype=np.intp), (2, 1, 0), mode=mode)
def test_empty_array_unravel(self):
res = np.unravel_index(np.zeros(0, dtype=np.intp), (2, 1, 0))
# res is a tuple of three empty arrays
assert(len(res) == 3)
assert(all(a.shape == (0,) for a in res))
with assert_raises(ValueError):
np.unravel_index([1], (2, 1, 0))
class TestGrid:
def test_basic(self):
a = mgrid[-1:1:10j]
b = mgrid[-1:1:0.1]
assert_(a.shape == (10,))
assert_(b.shape == (20,))
assert_(a[0] == -1)
assert_almost_equal(a[-1], 1)
assert_(b[0] == -1)
assert_almost_equal(b[1]-b[0], 0.1, 11)
assert_almost_equal(b[-1], b[0]+19*0.1, 11)
assert_almost_equal(a[1]-a[0], 2.0/9.0, 11)
def test_linspace_equivalence(self):
y, st = np.linspace(2, 10, retstep=True)
assert_almost_equal(st, 8/49.0)
assert_array_almost_equal(y, mgrid[2:10:50j], 13)
def test_nd(self):
c = mgrid[-1:1:10j, -2:2:10j]
d = mgrid[-1:1:0.1, -2:2:0.2]
assert_(c.shape == (2, 10, 10))
assert_(d.shape == (2, 20, 20))
assert_array_equal(c[0][0, :], -np.ones(10, 'd'))
assert_array_equal(c[1][:, 0], -2*np.ones(10, 'd'))
assert_array_almost_equal(c[0][-1, :], np.ones(10, 'd'), 11)
assert_array_almost_equal(c[1][:, -1], 2*np.ones(10, 'd'), 11)
assert_array_almost_equal(d[0, 1, :] - d[0, 0, :],
0.1*np.ones(20, 'd'), 11)
assert_array_almost_equal(d[1, :, 1] - d[1, :, 0],
0.2*np.ones(20, 'd'), 11)
def test_sparse(self):
grid_full = mgrid[-1:1:10j, -2:2:10j]
grid_sparse = ogrid[-1:1:10j, -2:2:10j]
# sparse grids can be made dense by broadcasting
grid_broadcast = np.broadcast_arrays(*grid_sparse)
for f, b in zip(grid_full, grid_broadcast):
assert_equal(f, b)
@pytest.mark.parametrize("start, stop, step, expected", [
(None, 10, 10j, (200, 10)),
(-10, 20, None, (1800, 30)),
])
def test_mgrid_size_none_handling(self, start, stop, step, expected):
# regression test None value handling for
# start and step values used by mgrid;
# internally, this aims to cover previously
# unexplored code paths in nd_grid()
grid = mgrid[start:stop:step, start:stop:step]
# need a smaller grid to explore one of the
# untested code paths
grid_small = mgrid[start:stop:step]
assert_equal(grid.size, expected[0])
assert_equal(grid_small.size, expected[1])
class TestConcatenator:
def test_1d(self):
assert_array_equal(r_[1, 2, 3, 4, 5, 6], np.array([1, 2, 3, 4, 5, 6]))
b = np.ones(5)
c = r_[b, 0, 0, b]
assert_array_equal(c, [1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1])
def test_mixed_type(self):
g = r_[10.1, 1:10]
assert_(g.dtype == 'f8')
def test_more_mixed_type(self):
g = r_[-10.1, np.array([1]), np.array([2, 3, 4]), 10.0]
assert_(g.dtype == 'f8')
def test_complex_step(self):
# Regression test for #12262
g = r_[0:36:100j]
assert_(g.shape == (100,))
def test_2d(self):
b = np.random.rand(5, 5)
c = np.random.rand(5, 5)
d = r_['1', b, c] # append columns
assert_(d.shape == (5, 10))
assert_array_equal(d[:, :5], b)
assert_array_equal(d[:, 5:], c)
d = r_[b, c]
assert_(d.shape == (10, 5))
assert_array_equal(d[:5, :], b)
assert_array_equal(d[5:, :], c)
def test_0d(self):
assert_equal(r_[0, np.array(1), 2], [0, 1, 2])
assert_equal(r_[[0, 1, 2], np.array(3)], [0, 1, 2, 3])
assert_equal(r_[np.array(0), [1, 2, 3]], [0, 1, 2, 3])
class TestNdenumerate:
def test_basic(self):
a = np.array([[1, 2], [3, 4]])
assert_equal(list(ndenumerate(a)),
[((0, 0), 1), ((0, 1), 2), ((1, 0), 3), ((1, 1), 4)])
class TestIndexExpression:
def test_regression_1(self):
# ticket #1196
a = np.arange(2)
assert_equal(a[:-1], a[s_[:-1]])
assert_equal(a[:-1], a[index_exp[:-1]])
def test_simple_1(self):
a = np.random.rand(4, 5, 6)
assert_equal(a[:, :3, [1, 2]], a[index_exp[:, :3, [1, 2]]])
assert_equal(a[:, :3, [1, 2]], a[s_[:, :3, [1, 2]]])
class TestIx_:
def test_regression_1(self):
# Test empty untyped inputs create outputs of indexing type, gh-5804
a, = np.ix_(range(0))
assert_equal(a.dtype, np.intp)
a, = np.ix_([])
assert_equal(a.dtype, np.intp)
# but if the type is specified, don't change it
a, = np.ix_(np.array([], dtype=np.float32))
assert_equal(a.dtype, np.float32)
def test_shape_and_dtype(self):
sizes = (4, 5, 3, 2)
# Test both lists and arrays
for func in (range, np.arange):
arrays = np.ix_(*[func(sz) for sz in sizes])
for k, (a, sz) in enumerate(zip(arrays, sizes)):
assert_equal(a.shape[k], sz)
assert_(all(sh == 1 for j, sh in enumerate(a.shape) if j != k))
assert_(np.issubdtype(a.dtype, np.integer))
def test_bool(self):
bool_a = [True, False, True, True]
int_a, = np.nonzero(bool_a)
assert_equal(np.ix_(bool_a)[0], int_a)
def test_1d_only(self):
idx2d = [[1, 2, 3], [4, 5, 6]]
assert_raises(ValueError, np.ix_, idx2d)
def test_repeated_input(self):
length_of_vector = 5
x = np.arange(length_of_vector)
out = ix_(x, x)
assert_equal(out[0].shape, (length_of_vector, 1))
assert_equal(out[1].shape, (1, length_of_vector))
# check that input shape is not modified
assert_equal(x.shape, (length_of_vector,))
def test_c_():
a = np.c_[np.array([[1, 2, 3]]), 0, 0, np.array([[4, 5, 6]])]
assert_equal(a, [[1, 2, 3, 0, 0, 4, 5, 6]])
class TestFillDiagonal:
def test_basic(self):
a = np.zeros((3, 3), int)
fill_diagonal(a, 5)
assert_array_equal(
a, np.array([[5, 0, 0],
[0, 5, 0],
[0, 0, 5]])
)
def test_tall_matrix(self):
a = np.zeros((10, 3), int)
fill_diagonal(a, 5)
assert_array_equal(
a, np.array([[5, 0, 0],
[0, 5, 0],
[0, 0, 5],
[0, 0, 0],
[0, 0, 0],
[0, 0, 0],
[0, 0, 0],
[0, 0, 0],
[0, 0, 0],
[0, 0, 0]])
)
def test_tall_matrix_wrap(self):
a = np.zeros((10, 3), int)
fill_diagonal(a, 5, True)
assert_array_equal(
a, np.array([[5, 0, 0],
[0, 5, 0],
[0, 0, 5],
[0, 0, 0],
[5, 0, 0],
[0, 5, 0],
[0, 0, 5],
[0, 0, 0],
[5, 0, 0],
[0, 5, 0]])
)
def test_wide_matrix(self):
a = np.zeros((3, 10), int)
fill_diagonal(a, 5)
assert_array_equal(
a, np.array([[5, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 5, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 5, 0, 0, 0, 0, 0, 0, 0]])
)
def test_operate_4d_array(self):
a = np.zeros((3, 3, 3, 3), int)
fill_diagonal(a, 4)
i = np.array([0, 1, 2])
assert_equal(np.where(a != 0), (i, i, i, i))
def test_low_dim_handling(self):
# raise error with low dimensionality
a = np.zeros(3, int)
with assert_raises_regex(ValueError, "at least 2-d"):
fill_diagonal(a, 5)
def test_hetero_shape_handling(self):
# raise error with high dimensionality and
# shape mismatch
a = np.zeros((3,3,7,3), int)
with assert_raises_regex(ValueError, "equal length"):
fill_diagonal(a, 2)
def test_diag_indices():
di = diag_indices(4)
a = np.array([[1, 2, 3, 4],
[5, 6, 7, 8],
[9, 10, 11, 12],
[13, 14, 15, 16]])
a[di] = 100
assert_array_equal(
a, np.array([[100, 2, 3, 4],
[5, 100, 7, 8],
[9, 10, 100, 12],
[13, 14, 15, 100]])
)
# Now, we create indices to manipulate a 3-d array:
d3 = diag_indices(2, 3)
# And use it to set the diagonal of a zeros array to 1:
a = np.zeros((2, 2, 2), int)
a[d3] = 1
assert_array_equal(
a, np.array([[[1, 0],
[0, 0]],
[[0, 0],
[0, 1]]])
)
class TestDiagIndicesFrom:
def test_diag_indices_from(self):
x = np.random.random((4, 4))
r, c = diag_indices_from(x)
assert_array_equal(r, np.arange(4))
assert_array_equal(c, np.arange(4))
def test_error_small_input(self):
x = np.ones(7)
with assert_raises_regex(ValueError, "at least 2-d"):
diag_indices_from(x)
def test_error_shape_mismatch(self):
x = np.zeros((3, 3, 2, 3), int)
with assert_raises_regex(ValueError, "equal length"):
diag_indices_from(x)
def test_ndindex():
x = list(ndindex(1, 2, 3))
expected = [ix for ix, e in ndenumerate(np.zeros((1, 2, 3)))]
assert_array_equal(x, expected)
x = list(ndindex((1, 2, 3)))
assert_array_equal(x, expected)
# Test use of scalars and tuples
x = list(ndindex((3,)))
assert_array_equal(x, list(ndindex(3)))
# Make sure size argument is optional
x = list(ndindex())
assert_equal(x, [()])
x = list(ndindex(()))
assert_equal(x, [()])
# Make sure 0-sized ndindex works correctly
x = list(ndindex(*[0]))
assert_equal(x, [])