Vehicle-Anti-Theft-Face-Rec.../venv/Lib/site-packages/sklearn/linear_model/tests/test_sgd.py

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2020-11-12 16:05:57 +00:00
import pickle
import pytest
import numpy as np
import scipy.sparse as sp
import joblib
from sklearn.utils._testing import assert_array_equal
from sklearn.utils._testing import assert_almost_equal
from sklearn.utils._testing import assert_array_almost_equal
from sklearn.utils._testing import assert_raises
from sklearn.utils._testing import assert_raises_regexp
from sklearn.utils._testing import assert_warns
from sklearn.utils._testing import ignore_warnings
from sklearn.utils.fixes import parse_version
from sklearn import linear_model, datasets, metrics
from sklearn.base import clone, is_classifier
from sklearn.preprocessing import LabelEncoder, scale, MinMaxScaler
from sklearn.preprocessing import StandardScaler
from sklearn.exceptions import ConvergenceWarning
from sklearn.model_selection import StratifiedShuffleSplit, ShuffleSplit
from sklearn.linear_model import _sgd_fast as sgd_fast
from sklearn.model_selection import RandomizedSearchCV
def _update_kwargs(kwargs):
if "random_state" not in kwargs:
kwargs["random_state"] = 42
if "tol" not in kwargs:
kwargs["tol"] = None
if "max_iter" not in kwargs:
kwargs["max_iter"] = 5
class _SparseSGDClassifier(linear_model.SGDClassifier):
def fit(self, X, y, *args, **kw):
X = sp.csr_matrix(X)
return super().fit(X, y, *args, **kw)
def partial_fit(self, X, y, *args, **kw):
X = sp.csr_matrix(X)
return super().partial_fit(X, y, *args, **kw)
def decision_function(self, X):
X = sp.csr_matrix(X)
return super().decision_function(X)
def predict_proba(self, X):
X = sp.csr_matrix(X)
return super().predict_proba(X)
class _SparseSGDRegressor(linear_model.SGDRegressor):
def fit(self, X, y, *args, **kw):
X = sp.csr_matrix(X)
return linear_model.SGDRegressor.fit(self, X, y, *args, **kw)
def partial_fit(self, X, y, *args, **kw):
X = sp.csr_matrix(X)
return linear_model.SGDRegressor.partial_fit(self, X, y, *args, **kw)
def decision_function(self, X, *args, **kw):
# XXX untested as of v0.22
X = sp.csr_matrix(X)
return linear_model.SGDRegressor.decision_function(self, X, *args,
**kw)
def SGDClassifier(**kwargs):
_update_kwargs(kwargs)
return linear_model.SGDClassifier(**kwargs)
def SGDRegressor(**kwargs):
_update_kwargs(kwargs)
return linear_model.SGDRegressor(**kwargs)
def SparseSGDClassifier(**kwargs):
_update_kwargs(kwargs)
return _SparseSGDClassifier(**kwargs)
def SparseSGDRegressor(**kwargs):
_update_kwargs(kwargs)
return _SparseSGDRegressor(**kwargs)
# Test Data
# test sample 1
X = np.array([[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1]])
Y = [1, 1, 1, 2, 2, 2]
T = np.array([[-1, -1], [2, 2], [3, 2]])
true_result = [1, 2, 2]
# test sample 2; string class labels
X2 = np.array([[-1, 1], [-0.75, 0.5], [-1.5, 1.5],
[1, 1], [0.75, 0.5], [1.5, 1.5],
[-1, -1], [0, -0.5], [1, -1]])
Y2 = ["one"] * 3 + ["two"] * 3 + ["three"] * 3
T2 = np.array([[-1.5, 0.5], [1, 2], [0, -2]])
true_result2 = ["one", "two", "three"]
# test sample 3
X3 = np.array([[1, 1, 0, 0, 0, 0], [1, 1, 0, 0, 0, 0],
[0, 0, 1, 0, 0, 0], [0, 0, 1, 0, 0, 0],
[0, 0, 0, 0, 1, 1], [0, 0, 0, 0, 1, 1],
[0, 0, 0, 1, 0, 0], [0, 0, 0, 1, 0, 0]])
Y3 = np.array([1, 1, 1, 1, 2, 2, 2, 2])
# test sample 4 - two more or less redundant feature groups
X4 = np.array([[1, 0.9, 0.8, 0, 0, 0], [1, .84, .98, 0, 0, 0],
[1, .96, .88, 0, 0, 0], [1, .91, .99, 0, 0, 0],
[0, 0, 0, .89, .91, 1], [0, 0, 0, .79, .84, 1],
[0, 0, 0, .91, .95, 1], [0, 0, 0, .93, 1, 1]])
Y4 = np.array([1, 1, 1, 1, 2, 2, 2, 2])
iris = datasets.load_iris()
# test sample 5 - test sample 1 as binary classification problem
X5 = np.array([[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1]])
Y5 = [1, 1, 1, 2, 2, 2]
true_result5 = [0, 1, 1]
###############################################################################
# Common Test Case to classification and regression
# a simple implementation of ASGD to use for testing
# uses squared loss to find the gradient
def asgd(klass, X, y, eta, alpha, weight_init=None, intercept_init=0.0):
if weight_init is None:
weights = np.zeros(X.shape[1])
else:
weights = weight_init
average_weights = np.zeros(X.shape[1])
intercept = intercept_init
average_intercept = 0.0
decay = 1.0
# sparse data has a fixed decay of .01
if klass in (SparseSGDClassifier, SparseSGDRegressor):
decay = .01
for i, entry in enumerate(X):
p = np.dot(entry, weights)
p += intercept
gradient = p - y[i]
weights *= 1.0 - (eta * alpha)
weights += -(eta * gradient * entry)
intercept += -(eta * gradient) * decay
average_weights *= i
average_weights += weights
average_weights /= i + 1.0
average_intercept *= i
average_intercept += intercept
average_intercept /= i + 1.0
return average_weights, average_intercept
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_sgd_bad_alpha(klass):
# Check whether expected ValueError on bad alpha
assert_raises(ValueError, klass, alpha=-.1)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_sgd_bad_penalty(klass):
# Check whether expected ValueError on bad penalty
assert_raises(ValueError, klass, penalty='foobar',
l1_ratio=0.85)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_sgd_bad_loss(klass):
# Check whether expected ValueError on bad loss
assert_raises(ValueError, klass, loss="foobar")
def _test_warm_start(klass, X, Y, lr):
# Test that explicit warm restart...
clf = klass(alpha=0.01, eta0=0.01, shuffle=False,
learning_rate=lr)
clf.fit(X, Y)
clf2 = klass(alpha=0.001, eta0=0.01, shuffle=False,
learning_rate=lr)
clf2.fit(X, Y,
coef_init=clf.coef_.copy(),
intercept_init=clf.intercept_.copy())
# ... and implicit warm restart are equivalent.
clf3 = klass(alpha=0.01, eta0=0.01, shuffle=False,
warm_start=True, learning_rate=lr)
clf3.fit(X, Y)
assert clf3.t_ == clf.t_
assert_array_almost_equal(clf3.coef_, clf.coef_)
clf3.set_params(alpha=0.001)
clf3.fit(X, Y)
assert clf3.t_ == clf2.t_
assert_array_almost_equal(clf3.coef_, clf2.coef_)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
@pytest.mark.parametrize('lr',
["constant", "optimal", "invscaling", "adaptive"])
def test_warm_start(klass, lr):
_test_warm_start(klass, X, Y, lr)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_input_format(klass):
# Input format tests.
clf = klass(alpha=0.01, shuffle=False)
clf.fit(X, Y)
Y_ = np.array(Y)[:, np.newaxis]
Y_ = np.c_[Y_, Y_]
assert_raises(ValueError, clf.fit, X, Y_)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_clone(klass):
# Test whether clone works ok.
clf = klass(alpha=0.01, penalty='l1')
clf = clone(clf)
clf.set_params(penalty='l2')
clf.fit(X, Y)
clf2 = klass(alpha=0.01, penalty='l2')
clf2.fit(X, Y)
assert_array_equal(clf.coef_, clf2.coef_)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_plain_has_no_average_attr(klass):
clf = klass(average=True, eta0=.01)
clf.fit(X, Y)
assert hasattr(clf, '_average_coef')
assert hasattr(clf, '_average_intercept')
assert hasattr(clf, '_standard_intercept')
assert hasattr(clf, '_standard_coef')
clf = klass()
clf.fit(X, Y)
assert not hasattr(clf, '_average_coef')
assert not hasattr(clf, '_average_intercept')
assert not hasattr(clf, '_standard_intercept')
assert not hasattr(clf, '_standard_coef')
# TODO: remove in 0.25
@pytest.mark.parametrize('klass', [SGDClassifier, SGDRegressor])
def test_sgd_deprecated_attr(klass):
est = klass(average=True, eta0=.01)
est.fit(X, Y)
msg = "Attribute {} was deprecated"
for att in ['average_coef_', 'average_intercept_',
'standard_coef_', 'standard_intercept_']:
with pytest.warns(FutureWarning, match=msg.format(att)):
getattr(est, att)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_late_onset_averaging_not_reached(klass):
clf1 = klass(average=600)
clf2 = klass()
for _ in range(100):
if is_classifier(clf1):
clf1.partial_fit(X, Y, classes=np.unique(Y))
clf2.partial_fit(X, Y, classes=np.unique(Y))
else:
clf1.partial_fit(X, Y)
clf2.partial_fit(X, Y)
assert_array_almost_equal(clf1.coef_, clf2.coef_, decimal=16)
assert_almost_equal(clf1.intercept_, clf2.intercept_, decimal=16)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_late_onset_averaging_reached(klass):
eta0 = .001
alpha = .0001
Y_encode = np.array(Y)
Y_encode[Y_encode == 1] = -1.0
Y_encode[Y_encode == 2] = 1.0
clf1 = klass(average=7, learning_rate="constant",
loss='squared_loss', eta0=eta0,
alpha=alpha, max_iter=2, shuffle=False)
clf2 = klass(average=0, learning_rate="constant",
loss='squared_loss', eta0=eta0,
alpha=alpha, max_iter=1, shuffle=False)
clf1.fit(X, Y_encode)
clf2.fit(X, Y_encode)
average_weights, average_intercept = \
asgd(klass, X, Y_encode, eta0, alpha,
weight_init=clf2.coef_.ravel(),
intercept_init=clf2.intercept_)
assert_array_almost_equal(clf1.coef_.ravel(),
average_weights.ravel(),
decimal=16)
assert_almost_equal(clf1.intercept_, average_intercept, decimal=16)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_sgd_bad_alpha_for_optimal_learning_rate(klass):
# Check whether expected ValueError on bad alpha, i.e. 0
# since alpha is used to compute the optimal learning rate
assert_raises(ValueError, klass,
alpha=0, learning_rate="optimal")
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_early_stopping(klass):
X = iris.data[iris.target > 0]
Y = iris.target[iris.target > 0]
for early_stopping in [True, False]:
max_iter = 1000
clf = klass(early_stopping=early_stopping, tol=1e-3,
max_iter=max_iter).fit(X, Y)
assert clf.n_iter_ < max_iter
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_adaptive_longer_than_constant(klass):
clf1 = klass(learning_rate="adaptive", eta0=0.01, tol=1e-3,
max_iter=100)
clf1.fit(iris.data, iris.target)
clf2 = klass(learning_rate="constant", eta0=0.01, tol=1e-3,
max_iter=100)
clf2.fit(iris.data, iris.target)
assert clf1.n_iter_ > clf2.n_iter_
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_validation_set_not_used_for_training(klass):
X, Y = iris.data, iris.target
validation_fraction = 0.4
seed = 42
shuffle = False
max_iter = 10
clf1 = klass(early_stopping=True,
random_state=np.random.RandomState(seed),
validation_fraction=validation_fraction,
learning_rate='constant', eta0=0.01,
tol=None, max_iter=max_iter, shuffle=shuffle)
clf1.fit(X, Y)
assert clf1.n_iter_ == max_iter
clf2 = klass(early_stopping=False,
random_state=np.random.RandomState(seed),
learning_rate='constant', eta0=0.01,
tol=None, max_iter=max_iter, shuffle=shuffle)
if is_classifier(clf2):
cv = StratifiedShuffleSplit(test_size=validation_fraction,
random_state=seed)
else:
cv = ShuffleSplit(test_size=validation_fraction,
random_state=seed)
idx_train, idx_val = next(cv.split(X, Y))
idx_train = np.sort(idx_train) # remove shuffling
clf2.fit(X[idx_train], Y[idx_train])
assert clf2.n_iter_ == max_iter
assert_array_equal(clf1.coef_, clf2.coef_)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_n_iter_no_change(klass):
X, Y = iris.data, iris.target
# test that n_iter_ increases monotonically with n_iter_no_change
for early_stopping in [True, False]:
n_iter_list = [klass(early_stopping=early_stopping,
n_iter_no_change=n_iter_no_change,
tol=1e-4, max_iter=1000
).fit(X, Y).n_iter_
for n_iter_no_change in [2, 3, 10]]
assert_array_equal(n_iter_list, sorted(n_iter_list))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier,
SGDRegressor, SparseSGDRegressor])
def test_not_enough_sample_for_early_stopping(klass):
# test an error is raised if the training or validation set is empty
clf = klass(early_stopping=True, validation_fraction=0.99)
with pytest.raises(ValueError):
clf.fit(X3, Y3)
###############################################################################
# Classification Test Case
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_clf(klass):
# Check that SGD gives any results :-)
for loss in ("hinge", "squared_hinge", "log", "modified_huber"):
clf = klass(penalty='l2', alpha=0.01, fit_intercept=True,
loss=loss, max_iter=10, shuffle=True)
clf.fit(X, Y)
# assert_almost_equal(clf.coef_[0], clf.coef_[1], decimal=7)
assert_array_equal(clf.predict(T), true_result)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_bad_l1_ratio(klass):
# Check whether expected ValueError on bad l1_ratio
assert_raises(ValueError, klass, l1_ratio=1.1)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_bad_learning_rate_schedule(klass):
# Check whether expected ValueError on bad learning_rate
assert_raises(ValueError, klass, learning_rate="<unknown>")
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_bad_eta0(klass):
# Check whether expected ValueError on bad eta0
assert_raises(ValueError, klass, eta0=0,
learning_rate="constant")
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_max_iter_param(klass):
# Test parameter validity check
assert_raises(ValueError, klass, max_iter=-10000)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_shuffle_param(klass):
# Test parameter validity check
assert_raises(ValueError, klass, shuffle="false")
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_early_stopping_param(klass):
# Test parameter validity check
assert_raises(ValueError, klass, early_stopping="false")
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_validation_fraction(klass):
# Test parameter validity check
assert_raises(ValueError, klass, validation_fraction=-.1)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_n_iter_no_change(klass):
# Test parameter validity check
assert_raises(ValueError, klass, n_iter_no_change=0)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_argument_coef(klass):
# Checks coef_init not allowed as model argument (only fit)
# Provided coef_ does not match dataset
assert_raises(TypeError, klass, coef_init=np.zeros((3,)))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_provide_coef(klass):
# Checks coef_init shape for the warm starts
# Provided coef_ does not match dataset.
assert_raises(ValueError, klass().fit,
X, Y, coef_init=np.zeros((3,)))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_set_intercept(klass):
# Checks intercept_ shape for the warm starts
# Provided intercept_ does not match dataset.
assert_raises(ValueError, klass().fit,
X, Y, intercept_init=np.zeros((3,)))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_early_stopping_with_partial_fit(klass):
# Test parameter validity check
assert_raises(ValueError,
klass(early_stopping=True).partial_fit, X, Y)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_set_intercept_binary(klass):
# Checks intercept_ shape for the warm starts in binary case
klass().fit(X5, Y5, intercept_init=0)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_average_binary_computed_correctly(klass):
# Checks the SGDClassifier correctly computes the average weights
eta = .1
alpha = 2.
n_samples = 20
n_features = 10
rng = np.random.RandomState(0)
X = rng.normal(size=(n_samples, n_features))
w = rng.normal(size=n_features)
clf = klass(loss='squared_loss',
learning_rate='constant',
eta0=eta, alpha=alpha,
fit_intercept=True,
max_iter=1, average=True, shuffle=False)
# simple linear function without noise
y = np.dot(X, w)
y = np.sign(y)
clf.fit(X, y)
average_weights, average_intercept = asgd(klass, X, y, eta, alpha)
average_weights = average_weights.reshape(1, -1)
assert_array_almost_equal(clf.coef_,
average_weights,
decimal=14)
assert_almost_equal(clf.intercept_, average_intercept, decimal=14)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_set_intercept_to_intercept(klass):
# Checks intercept_ shape consistency for the warm starts
# Inconsistent intercept_ shape.
clf = klass().fit(X5, Y5)
klass().fit(X5, Y5, intercept_init=clf.intercept_)
clf = klass().fit(X, Y)
klass().fit(X, Y, intercept_init=clf.intercept_)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_at_least_two_labels(klass):
# Target must have at least two labels
clf = klass(alpha=0.01, max_iter=20)
assert_raises(ValueError, clf.fit, X2, np.ones(9))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_partial_fit_weight_class_balanced(klass):
# partial_fit with class_weight='balanced' not supported"""
regex = (r"class_weight 'balanced' is not supported for "
r"partial_fit\. In order to use 'balanced' weights, "
r"use compute_class_weight\('balanced', classes=classes, y=y\). "
r"In place of y you can us a large enough sample "
r"of the full training set target to properly "
r"estimate the class frequency distributions\. "
r"Pass the resulting weights as the class_weight "
r"parameter\.")
assert_raises_regexp(ValueError,
regex,
klass(class_weight='balanced').partial_fit,
X, Y, classes=np.unique(Y))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_multiclass(klass):
# Multi-class test case
clf = klass(alpha=0.01, max_iter=20).fit(X2, Y2)
assert clf.coef_.shape == (3, 2)
assert clf.intercept_.shape == (3,)
assert clf.decision_function([[0, 0]]).shape == (1, 3)
pred = clf.predict(T2)
assert_array_equal(pred, true_result2)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_multiclass_average(klass):
eta = .001
alpha = .01
# Multi-class average test case
clf = klass(loss='squared_loss',
learning_rate='constant',
eta0=eta, alpha=alpha,
fit_intercept=True,
max_iter=1, average=True, shuffle=False)
np_Y2 = np.array(Y2)
clf.fit(X2, np_Y2)
classes = np.unique(np_Y2)
for i, cl in enumerate(classes):
y_i = np.ones(np_Y2.shape[0])
y_i[np_Y2 != cl] = -1
average_coef, average_intercept = asgd(klass, X2, y_i, eta, alpha)
assert_array_almost_equal(average_coef, clf.coef_[i], decimal=16)
assert_almost_equal(average_intercept,
clf.intercept_[i],
decimal=16)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_multiclass_with_init_coef(klass):
# Multi-class test case
clf = klass(alpha=0.01, max_iter=20)
clf.fit(X2, Y2, coef_init=np.zeros((3, 2)),
intercept_init=np.zeros(3))
assert clf.coef_.shape == (3, 2)
assert clf.intercept_.shape, (3,)
pred = clf.predict(T2)
assert_array_equal(pred, true_result2)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_multiclass_njobs(klass):
# Multi-class test case with multi-core support
clf = klass(alpha=0.01, max_iter=20, n_jobs=2).fit(X2, Y2)
assert clf.coef_.shape == (3, 2)
assert clf.intercept_.shape == (3,)
assert clf.decision_function([[0, 0]]).shape == (1, 3)
pred = clf.predict(T2)
assert_array_equal(pred, true_result2)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_set_coef_multiclass(klass):
# Checks coef_init and intercept_init shape for multi-class
# problems
# Provided coef_ does not match dataset
clf = klass()
assert_raises(ValueError, clf.fit, X2, Y2, coef_init=np.zeros((2, 2)))
# Provided coef_ does match dataset
clf = klass().fit(X2, Y2, coef_init=np.zeros((3, 2)))
# Provided intercept_ does not match dataset
clf = klass()
assert_raises(ValueError, clf.fit, X2, Y2,
intercept_init=np.zeros((1,)))
# Provided intercept_ does match dataset.
clf = klass().fit(X2, Y2, intercept_init=np.zeros((3,)))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_predict_proba_method_access(klass):
# Checks that SGDClassifier predict_proba and predict_log_proba methods
# can either be accessed or raise an appropriate error message
# otherwise. See
# https://github.com/scikit-learn/scikit-learn/issues/10938 for more
# details.
for loss in linear_model.SGDClassifier.loss_functions:
clf = SGDClassifier(loss=loss)
if loss in ('log', 'modified_huber'):
assert hasattr(clf, 'predict_proba')
assert hasattr(clf, 'predict_log_proba')
else:
message = ("probability estimates are not "
"available for loss={!r}".format(loss))
assert not hasattr(clf, 'predict_proba')
assert not hasattr(clf, 'predict_log_proba')
with pytest.raises(AttributeError,
match=message):
clf.predict_proba
with pytest.raises(AttributeError,
match=message):
clf.predict_log_proba
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_proba(klass):
# Check SGD.predict_proba
# Hinge loss does not allow for conditional prob estimate.
# We cannot use the factory here, because it defines predict_proba
# anyway.
clf = SGDClassifier(loss="hinge", alpha=0.01,
max_iter=10, tol=None).fit(X, Y)
assert not hasattr(clf, "predict_proba")
assert not hasattr(clf, "predict_log_proba")
# log and modified_huber losses can output probability estimates
# binary case
for loss in ["log", "modified_huber"]:
clf = klass(loss=loss, alpha=0.01, max_iter=10)
clf.fit(X, Y)
p = clf.predict_proba([[3, 2]])
assert p[0, 1] > 0.5
p = clf.predict_proba([[-1, -1]])
assert p[0, 1] < 0.5
p = clf.predict_log_proba([[3, 2]])
assert p[0, 1] > p[0, 0]
p = clf.predict_log_proba([[-1, -1]])
assert p[0, 1] < p[0, 0]
# log loss multiclass probability estimates
clf = klass(loss="log", alpha=0.01, max_iter=10).fit(X2, Y2)
d = clf.decision_function([[.1, -.1], [.3, .2]])
p = clf.predict_proba([[.1, -.1], [.3, .2]])
assert_array_equal(np.argmax(p, axis=1), np.argmax(d, axis=1))
assert_almost_equal(p[0].sum(), 1)
assert np.all(p[0] >= 0)
p = clf.predict_proba([[-1, -1]])
d = clf.decision_function([[-1, -1]])
assert_array_equal(np.argsort(p[0]), np.argsort(d[0]))
lp = clf.predict_log_proba([[3, 2]])
p = clf.predict_proba([[3, 2]])
assert_array_almost_equal(np.log(p), lp)
lp = clf.predict_log_proba([[-1, -1]])
p = clf.predict_proba([[-1, -1]])
assert_array_almost_equal(np.log(p), lp)
# Modified Huber multiclass probability estimates; requires a separate
# test because the hard zero/one probabilities may destroy the
# ordering present in decision_function output.
clf = klass(loss="modified_huber", alpha=0.01, max_iter=10)
clf.fit(X2, Y2)
d = clf.decision_function([[3, 2]])
p = clf.predict_proba([[3, 2]])
if klass != SparseSGDClassifier:
assert np.argmax(d, axis=1) == np.argmax(p, axis=1)
else: # XXX the sparse test gets a different X2 (?)
assert np.argmin(d, axis=1) == np.argmin(p, axis=1)
# the following sample produces decision_function values < -1,
# which would cause naive normalization to fail (see comment
# in SGDClassifier.predict_proba)
x = X.mean(axis=0)
d = clf.decision_function([x])
if np.all(d < -1): # XXX not true in sparse test case (why?)
p = clf.predict_proba([x])
assert_array_almost_equal(p[0], [1 / 3.] * 3)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sgd_l1(klass):
# Test L1 regularization
n = len(X4)
rng = np.random.RandomState(13)
idx = np.arange(n)
rng.shuffle(idx)
X = X4[idx, :]
Y = Y4[idx]
clf = klass(penalty='l1', alpha=.2, fit_intercept=False,
max_iter=2000, tol=None, shuffle=False)
clf.fit(X, Y)
assert_array_equal(clf.coef_[0, 1:-1], np.zeros((4,)))
pred = clf.predict(X)
assert_array_equal(pred, Y)
# test sparsify with dense inputs
clf.sparsify()
assert sp.issparse(clf.coef_)
pred = clf.predict(X)
assert_array_equal(pred, Y)
# pickle and unpickle with sparse coef_
clf = pickle.loads(pickle.dumps(clf))
assert sp.issparse(clf.coef_)
pred = clf.predict(X)
assert_array_equal(pred, Y)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_class_weights(klass):
# Test class weights.
X = np.array([[-1.0, -1.0], [-1.0, 0], [-.8, -1.0],
[1.0, 1.0], [1.0, 0.0]])
y = [1, 1, 1, -1, -1]
clf = klass(alpha=0.1, max_iter=1000, fit_intercept=False,
class_weight=None)
clf.fit(X, y)
assert_array_equal(clf.predict([[0.2, -1.0]]), np.array([1]))
# we give a small weights to class 1
clf = klass(alpha=0.1, max_iter=1000, fit_intercept=False,
class_weight={1: 0.001})
clf.fit(X, y)
# now the hyperplane should rotate clock-wise and
# the prediction on this point should shift
assert_array_equal(clf.predict([[0.2, -1.0]]), np.array([-1]))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_equal_class_weight(klass):
# Test if equal class weights approx. equals no class weights.
X = [[1, 0], [1, 0], [0, 1], [0, 1]]
y = [0, 0, 1, 1]
clf = klass(alpha=0.1, max_iter=1000, class_weight=None)
clf.fit(X, y)
X = [[1, 0], [0, 1]]
y = [0, 1]
clf_weighted = klass(alpha=0.1, max_iter=1000,
class_weight={0: 0.5, 1: 0.5})
clf_weighted.fit(X, y)
# should be similar up to some epsilon due to learning rate schedule
assert_almost_equal(clf.coef_, clf_weighted.coef_, decimal=2)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_wrong_class_weight_label(klass):
# ValueError due to not existing class label.
clf = klass(alpha=0.1, max_iter=1000, class_weight={0: 0.5})
assert_raises(ValueError, clf.fit, X, Y)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_wrong_class_weight_format(klass):
# ValueError due to wrong class_weight argument type.
clf = klass(alpha=0.1, max_iter=1000, class_weight=[0.5])
assert_raises(ValueError, clf.fit, X, Y)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_weights_multiplied(klass):
# Tests that class_weight and sample_weight are multiplicative
class_weights = {1: .6, 2: .3}
rng = np.random.RandomState(0)
sample_weights = rng.random_sample(Y4.shape[0])
multiplied_together = np.copy(sample_weights)
multiplied_together[Y4 == 1] *= class_weights[1]
multiplied_together[Y4 == 2] *= class_weights[2]
clf1 = klass(alpha=0.1, max_iter=20, class_weight=class_weights)
clf2 = klass(alpha=0.1, max_iter=20)
clf1.fit(X4, Y4, sample_weight=sample_weights)
clf2.fit(X4, Y4, sample_weight=multiplied_together)
assert_almost_equal(clf1.coef_, clf2.coef_)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_balanced_weight(klass):
# Test class weights for imbalanced data"""
# compute reference metrics on iris dataset that is quite balanced by
# default
X, y = iris.data, iris.target
X = scale(X)
idx = np.arange(X.shape[0])
rng = np.random.RandomState(6)
rng.shuffle(idx)
X = X[idx]
y = y[idx]
clf = klass(alpha=0.0001, max_iter=1000,
class_weight=None, shuffle=False).fit(X, y)
f1 = metrics.f1_score(y, clf.predict(X), average='weighted')
assert_almost_equal(f1, 0.96, decimal=1)
# make the same prediction using balanced class_weight
clf_balanced = klass(alpha=0.0001, max_iter=1000,
class_weight="balanced",
shuffle=False).fit(X, y)
f1 = metrics.f1_score(y, clf_balanced.predict(X), average='weighted')
assert_almost_equal(f1, 0.96, decimal=1)
# Make sure that in the balanced case it does not change anything
# to use "balanced"
assert_array_almost_equal(clf.coef_, clf_balanced.coef_, 6)
# build an very very imbalanced dataset out of iris data
X_0 = X[y == 0, :]
y_0 = y[y == 0]
X_imbalanced = np.vstack([X] + [X_0] * 10)
y_imbalanced = np.concatenate([y] + [y_0] * 10)
# fit a model on the imbalanced data without class weight info
clf = klass(max_iter=1000, class_weight=None, shuffle=False)
clf.fit(X_imbalanced, y_imbalanced)
y_pred = clf.predict(X)
assert metrics.f1_score(y, y_pred, average='weighted') < 0.96
# fit a model with balanced class_weight enabled
clf = klass(max_iter=1000, class_weight="balanced",
shuffle=False)
clf.fit(X_imbalanced, y_imbalanced)
y_pred = clf.predict(X)
assert metrics.f1_score(y, y_pred, average='weighted') > 0.96
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_sample_weights(klass):
# Test weights on individual samples
X = np.array([[-1.0, -1.0], [-1.0, 0], [-.8, -1.0],
[1.0, 1.0], [1.0, 0.0]])
y = [1, 1, 1, -1, -1]
clf = klass(alpha=0.1, max_iter=1000, fit_intercept=False)
clf.fit(X, y)
assert_array_equal(clf.predict([[0.2, -1.0]]), np.array([1]))
# we give a small weights to class 1
clf.fit(X, y, sample_weight=[0.001] * 3 + [1] * 2)
# now the hyperplane should rotate clock-wise and
# the prediction on this point should shift
assert_array_equal(clf.predict([[0.2, -1.0]]), np.array([-1]))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_wrong_sample_weights(klass):
# Test if ValueError is raised if sample_weight has wrong shape
clf = klass(alpha=0.1, max_iter=1000, fit_intercept=False)
# provided sample_weight too long
assert_raises(ValueError, clf.fit, X, Y, sample_weight=np.arange(7))
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_partial_fit_exception(klass):
clf = klass(alpha=0.01)
# classes was not specified
assert_raises(ValueError, clf.partial_fit, X3, Y3)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_partial_fit_binary(klass):
third = X.shape[0] // 3
clf = klass(alpha=0.01)
classes = np.unique(Y)
clf.partial_fit(X[:third], Y[:third], classes=classes)
assert clf.coef_.shape == (1, X.shape[1])
assert clf.intercept_.shape == (1,)
assert clf.decision_function([[0, 0]]).shape == (1, )
id1 = id(clf.coef_.data)
clf.partial_fit(X[third:], Y[third:])
id2 = id(clf.coef_.data)
# check that coef_ haven't been re-allocated
assert id1, id2
y_pred = clf.predict(T)
assert_array_equal(y_pred, true_result)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_partial_fit_multiclass(klass):
third = X2.shape[0] // 3
clf = klass(alpha=0.01)
classes = np.unique(Y2)
clf.partial_fit(X2[:third], Y2[:third], classes=classes)
assert clf.coef_.shape == (3, X2.shape[1])
assert clf.intercept_.shape == (3,)
assert clf.decision_function([[0, 0]]).shape == (1, 3)
id1 = id(clf.coef_.data)
clf.partial_fit(X2[third:], Y2[third:])
id2 = id(clf.coef_.data)
# check that coef_ haven't been re-allocated
assert id1, id2
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_partial_fit_multiclass_average(klass):
third = X2.shape[0] // 3
clf = klass(alpha=0.01, average=X2.shape[0])
classes = np.unique(Y2)
clf.partial_fit(X2[:third], Y2[:third], classes=classes)
assert clf.coef_.shape == (3, X2.shape[1])
assert clf.intercept_.shape == (3,)
clf.partial_fit(X2[third:], Y2[third:])
assert clf.coef_.shape == (3, X2.shape[1])
assert clf.intercept_.shape == (3,)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_fit_then_partial_fit(klass):
# Partial_fit should work after initial fit in the multiclass case.
# Non-regression test for #2496; fit would previously produce a
# Fortran-ordered coef_ that subsequent partial_fit couldn't handle.
clf = klass()
clf.fit(X2, Y2)
clf.partial_fit(X2, Y2) # no exception here
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
@pytest.mark.parametrize('lr',
["constant", "optimal", "invscaling", "adaptive"])
def test_partial_fit_equal_fit_classif(klass, lr):
for X_, Y_, T_ in ((X, Y, T), (X2, Y2, T2)):
clf = klass(alpha=0.01, eta0=0.01, max_iter=2,
learning_rate=lr, shuffle=False)
clf.fit(X_, Y_)
y_pred = clf.decision_function(T_)
t = clf.t_
classes = np.unique(Y_)
clf = klass(alpha=0.01, eta0=0.01, learning_rate=lr,
shuffle=False)
for i in range(2):
clf.partial_fit(X_, Y_, classes=classes)
y_pred2 = clf.decision_function(T_)
assert clf.t_ == t
assert_array_almost_equal(y_pred, y_pred2, decimal=2)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_regression_losses(klass):
random_state = np.random.RandomState(1)
clf = klass(alpha=0.01, learning_rate="constant",
eta0=0.1, loss="epsilon_insensitive",
random_state=random_state)
clf.fit(X, Y)
assert 1.0 == np.mean(clf.predict(X) == Y)
clf = klass(alpha=0.01, learning_rate="constant",
eta0=0.1, loss="squared_epsilon_insensitive",
random_state=random_state)
clf.fit(X, Y)
assert 1.0 == np.mean(clf.predict(X) == Y)
clf = klass(alpha=0.01, loss="huber", random_state=random_state)
clf.fit(X, Y)
assert 1.0 == np.mean(clf.predict(X) == Y)
clf = klass(alpha=0.01, learning_rate="constant", eta0=0.01,
loss="squared_loss", random_state=random_state)
clf.fit(X, Y)
assert 1.0 == np.mean(clf.predict(X) == Y)
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_warm_start_multiclass(klass):
_test_warm_start(klass, X2, Y2, "optimal")
@pytest.mark.parametrize('klass', [SGDClassifier, SparseSGDClassifier])
def test_multiple_fit(klass):
# Test multiple calls of fit w/ different shaped inputs.
clf = klass(alpha=0.01, shuffle=False)
clf.fit(X, Y)
assert hasattr(clf, "coef_")
# Non-regression test: try fitting with a different label set.
y = [["ham", "spam"][i] for i in LabelEncoder().fit_transform(Y)]
clf.fit(X[:, :-1], y)
###############################################################################
# Regression Test Case
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_sgd_reg(klass):
# Check that SGD gives any results.
clf = klass(alpha=0.1, max_iter=2, fit_intercept=False)
clf.fit([[0, 0], [1, 1], [2, 2]], [0, 1, 2])
assert clf.coef_[0] == clf.coef_[1]
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_sgd_averaged_computed_correctly(klass):
# Tests the average regressor matches the naive implementation
eta = .001
alpha = .01
n_samples = 20
n_features = 10
rng = np.random.RandomState(0)
X = rng.normal(size=(n_samples, n_features))
w = rng.normal(size=n_features)
# simple linear function without noise
y = np.dot(X, w)
clf = klass(loss='squared_loss',
learning_rate='constant',
eta0=eta, alpha=alpha,
fit_intercept=True,
max_iter=1, average=True, shuffle=False)
clf.fit(X, y)
average_weights, average_intercept = asgd(klass, X, y, eta, alpha)
assert_array_almost_equal(clf.coef_,
average_weights,
decimal=16)
assert_almost_equal(clf.intercept_, average_intercept, decimal=16)
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_sgd_averaged_partial_fit(klass):
# Tests whether the partial fit yields the same average as the fit
eta = .001
alpha = .01
n_samples = 20
n_features = 10
rng = np.random.RandomState(0)
X = rng.normal(size=(n_samples, n_features))
w = rng.normal(size=n_features)
# simple linear function without noise
y = np.dot(X, w)
clf = klass(loss='squared_loss',
learning_rate='constant',
eta0=eta, alpha=alpha,
fit_intercept=True,
max_iter=1, average=True, shuffle=False)
clf.partial_fit(X[:int(n_samples / 2)][:], y[:int(n_samples / 2)])
clf.partial_fit(X[int(n_samples / 2):][:], y[int(n_samples / 2):])
average_weights, average_intercept = asgd(klass, X, y, eta, alpha)
assert_array_almost_equal(clf.coef_,
average_weights,
decimal=16)
assert_almost_equal(clf.intercept_[0], average_intercept, decimal=16)
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_average_sparse(klass):
# Checks the average weights on data with 0s
eta = .001
alpha = .01
clf = klass(loss='squared_loss',
learning_rate='constant',
eta0=eta, alpha=alpha,
fit_intercept=True,
max_iter=1, average=True, shuffle=False)
n_samples = Y3.shape[0]
clf.partial_fit(X3[:int(n_samples / 2)][:], Y3[:int(n_samples / 2)])
clf.partial_fit(X3[int(n_samples / 2):][:], Y3[int(n_samples / 2):])
average_weights, average_intercept = asgd(klass, X3, Y3, eta, alpha)
assert_array_almost_equal(clf.coef_,
average_weights,
decimal=16)
assert_almost_equal(clf.intercept_, average_intercept, decimal=16)
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_sgd_least_squares_fit(klass):
xmin, xmax = -5, 5
n_samples = 100
rng = np.random.RandomState(0)
X = np.linspace(xmin, xmax, n_samples).reshape(n_samples, 1)
# simple linear function without noise
y = 0.5 * X.ravel()
clf = klass(loss='squared_loss', alpha=0.1, max_iter=20,
fit_intercept=False)
clf.fit(X, y)
score = clf.score(X, y)
assert score > 0.99
# simple linear function with noise
y = 0.5 * X.ravel() + rng.randn(n_samples, 1).ravel()
clf = klass(loss='squared_loss', alpha=0.1, max_iter=20,
fit_intercept=False)
clf.fit(X, y)
score = clf.score(X, y)
assert score > 0.5
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_sgd_epsilon_insensitive(klass):
xmin, xmax = -5, 5
n_samples = 100
rng = np.random.RandomState(0)
X = np.linspace(xmin, xmax, n_samples).reshape(n_samples, 1)
# simple linear function without noise
y = 0.5 * X.ravel()
clf = klass(loss='epsilon_insensitive', epsilon=0.01,
alpha=0.1, max_iter=20,
fit_intercept=False)
clf.fit(X, y)
score = clf.score(X, y)
assert score > 0.99
# simple linear function with noise
y = 0.5 * X.ravel() + rng.randn(n_samples, 1).ravel()
clf = klass(loss='epsilon_insensitive', epsilon=0.01,
alpha=0.1, max_iter=20,
fit_intercept=False)
clf.fit(X, y)
score = clf.score(X, y)
assert score > 0.5
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_sgd_huber_fit(klass):
xmin, xmax = -5, 5
n_samples = 100
rng = np.random.RandomState(0)
X = np.linspace(xmin, xmax, n_samples).reshape(n_samples, 1)
# simple linear function without noise
y = 0.5 * X.ravel()
clf = klass(loss="huber", epsilon=0.1, alpha=0.1, max_iter=20,
fit_intercept=False)
clf.fit(X, y)
score = clf.score(X, y)
assert score > 0.99
# simple linear function with noise
y = 0.5 * X.ravel() + rng.randn(n_samples, 1).ravel()
clf = klass(loss="huber", epsilon=0.1, alpha=0.1, max_iter=20,
fit_intercept=False)
clf.fit(X, y)
score = clf.score(X, y)
assert score > 0.5
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_elasticnet_convergence(klass):
# Check that the SGD output is consistent with coordinate descent
n_samples, n_features = 1000, 5
rng = np.random.RandomState(0)
X = rng.randn(n_samples, n_features)
# ground_truth linear model that generate y from X and to which the
# models should converge if the regularizer would be set to 0.0
ground_truth_coef = rng.randn(n_features)
y = np.dot(X, ground_truth_coef)
# XXX: alpha = 0.1 seems to cause convergence problems
for alpha in [0.01, 0.001]:
for l1_ratio in [0.5, 0.8, 1.0]:
cd = linear_model.ElasticNet(alpha=alpha, l1_ratio=l1_ratio,
fit_intercept=False)
cd.fit(X, y)
sgd = klass(penalty='elasticnet', max_iter=50,
alpha=alpha, l1_ratio=l1_ratio,
fit_intercept=False)
sgd.fit(X, y)
err_msg = ("cd and sgd did not converge to comparable "
"results for alpha=%f and l1_ratio=%f"
% (alpha, l1_ratio))
assert_almost_equal(cd.coef_, sgd.coef_, decimal=2,
err_msg=err_msg)
@ignore_warnings
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_partial_fit(klass):
third = X.shape[0] // 3
clf = klass(alpha=0.01)
clf.partial_fit(X[:third], Y[:third])
assert clf.coef_.shape == (X.shape[1], )
assert clf.intercept_.shape == (1,)
assert clf.predict([[0, 0]]).shape == (1, )
id1 = id(clf.coef_.data)
clf.partial_fit(X[third:], Y[third:])
id2 = id(clf.coef_.data)
# check that coef_ haven't been re-allocated
assert id1, id2
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
@pytest.mark.parametrize('lr',
["constant", "optimal", "invscaling", "adaptive"])
def test_partial_fit_equal_fit(klass, lr):
clf = klass(alpha=0.01, max_iter=2, eta0=0.01,
learning_rate=lr, shuffle=False)
clf.fit(X, Y)
y_pred = clf.predict(T)
t = clf.t_
clf = klass(alpha=0.01, eta0=0.01,
learning_rate=lr, shuffle=False)
for i in range(2):
clf.partial_fit(X, Y)
y_pred2 = clf.predict(T)
assert clf.t_ == t
assert_array_almost_equal(y_pred, y_pred2, decimal=2)
@pytest.mark.parametrize('klass', [SGDRegressor, SparseSGDRegressor])
def test_loss_function_epsilon(klass):
clf = klass(epsilon=0.9)
clf.set_params(epsilon=0.1)
assert clf.loss_functions['huber'][1] == 0.1
def test_l1_ratio():
# Test if l1 ratio extremes match L1 and L2 penalty settings.
X, y = datasets.make_classification(n_samples=1000,
n_features=100, n_informative=20,
random_state=1234)
# test if elasticnet with l1_ratio near 1 gives same result as pure l1
est_en = SGDClassifier(alpha=0.001, penalty='elasticnet', tol=None,
max_iter=6, l1_ratio=0.9999999999,
random_state=42).fit(X, y)
est_l1 = SGDClassifier(alpha=0.001, penalty='l1', max_iter=6,
random_state=42, tol=None).fit(X, y)
assert_array_almost_equal(est_en.coef_, est_l1.coef_)
# test if elasticnet with l1_ratio near 0 gives same result as pure l2
est_en = SGDClassifier(alpha=0.001, penalty='elasticnet', tol=None,
max_iter=6, l1_ratio=0.0000000001,
random_state=42).fit(X, y)
est_l2 = SGDClassifier(alpha=0.001, penalty='l2', max_iter=6,
random_state=42, tol=None).fit(X, y)
assert_array_almost_equal(est_en.coef_, est_l2.coef_)
def test_underflow_or_overlow():
with np.errstate(all='raise'):
# Generate some weird data with hugely unscaled features
rng = np.random.RandomState(0)
n_samples = 100
n_features = 10
X = rng.normal(size=(n_samples, n_features))
X[:, :2] *= 1e300
assert np.isfinite(X).all()
# Use MinMaxScaler to scale the data without introducing a numerical
# instability (computing the standard deviation naively is not possible
# on this data)
X_scaled = MinMaxScaler().fit_transform(X)
assert np.isfinite(X_scaled).all()
# Define a ground truth on the scaled data
ground_truth = rng.normal(size=n_features)
y = (np.dot(X_scaled, ground_truth) > 0.).astype(np.int32)
assert_array_equal(np.unique(y), [0, 1])
model = SGDClassifier(alpha=0.1, loss='squared_hinge', max_iter=500)
# smoke test: model is stable on scaled data
model.fit(X_scaled, y)
assert np.isfinite(model.coef_).all()
# model is numerically unstable on unscaled data
msg_regxp = (r"Floating-point under-/overflow occurred at epoch #.*"
" Scaling input data with StandardScaler or MinMaxScaler"
" might help.")
assert_raises_regexp(ValueError, msg_regxp, model.fit, X, y)
def test_numerical_stability_large_gradient():
# Non regression test case for numerical stability on scaled problems
# where the gradient can still explode with some losses
model = SGDClassifier(loss='squared_hinge', max_iter=10, shuffle=True,
penalty='elasticnet', l1_ratio=0.3, alpha=0.01,
eta0=0.001, random_state=0, tol=None)
with np.errstate(all='raise'):
model.fit(iris.data, iris.target)
assert np.isfinite(model.coef_).all()
@pytest.mark.parametrize('penalty', ['l2', 'l1', 'elasticnet'])
def test_large_regularization(penalty):
# Non regression tests for numerical stability issues caused by large
# regularization parameters
model = SGDClassifier(alpha=1e5, learning_rate='constant', eta0=0.1,
penalty=penalty, shuffle=False,
tol=None, max_iter=6)
with np.errstate(all='raise'):
model.fit(iris.data, iris.target)
assert_array_almost_equal(model.coef_, np.zeros_like(model.coef_))
def test_tol_parameter():
# Test that the tol parameter behaves as expected
X = StandardScaler().fit_transform(iris.data)
y = iris.target == 1
# With tol is None, the number of iteration should be equal to max_iter
max_iter = 42
model_0 = SGDClassifier(tol=None, random_state=0, max_iter=max_iter)
model_0.fit(X, y)
assert max_iter == model_0.n_iter_
# If tol is not None, the number of iteration should be less than max_iter
max_iter = 2000
model_1 = SGDClassifier(tol=0, random_state=0, max_iter=max_iter)
model_1.fit(X, y)
assert max_iter > model_1.n_iter_
assert model_1.n_iter_ > 5
# A larger tol should yield a smaller number of iteration
model_2 = SGDClassifier(tol=0.1, random_state=0, max_iter=max_iter)
model_2.fit(X, y)
assert model_1.n_iter_ > model_2.n_iter_
assert model_2.n_iter_ > 3
# Strict tolerance and small max_iter should trigger a warning
model_3 = SGDClassifier(max_iter=3, tol=1e-3, random_state=0)
model_3 = assert_warns(ConvergenceWarning, model_3.fit, X, y)
assert model_3.n_iter_ == 3
def _test_gradient_common(loss_function, cases):
# Test gradient of different loss functions
# cases is a list of (p, y, expected)
for p, y, expected in cases:
assert_almost_equal(loss_function.dloss(p, y), expected)
def test_gradient_hinge():
# Test Hinge (hinge / perceptron)
# hinge
loss = sgd_fast.Hinge(1.0)
cases = [
# (p, y, expected)
(1.1, 1.0, 0.0), (-2.0, -1.0, 0.0),
(1.0, 1.0, -1.0), (-1.0, -1.0, 1.0), (0.5, 1.0, -1.0),
(2.0, -1.0, 1.0), (-0.5, -1.0, 1.0), (0.0, 1.0, -1.0)
]
_test_gradient_common(loss, cases)
# perceptron
loss = sgd_fast.Hinge(0.0)
cases = [
# (p, y, expected)
(1.0, 1.0, 0.0), (-0.1, -1.0, 0.0),
(0.0, 1.0, -1.0), (0.0, -1.0, 1.0), (0.5, -1.0, 1.0),
(2.0, -1.0, 1.0), (-0.5, 1.0, -1.0), (-1.0, 1.0, -1.0),
]
_test_gradient_common(loss, cases)
def test_gradient_squared_hinge():
# Test SquaredHinge
loss = sgd_fast.SquaredHinge(1.0)
cases = [
# (p, y, expected)
(1.0, 1.0, 0.0), (-2.0, -1.0, 0.0), (1.0, -1.0, 4.0),
(-1.0, 1.0, -4.0), (0.5, 1.0, -1.0), (0.5, -1.0, 3.0)
]
_test_gradient_common(loss, cases)
def test_gradient_log():
# Test Log (logistic loss)
loss = sgd_fast.Log()
cases = [
# (p, y, expected)
(1.0, 1.0, -1.0 / (np.exp(1.0) + 1.0)),
(1.0, -1.0, 1.0 / (np.exp(-1.0) + 1.0)),
(-1.0, -1.0, 1.0 / (np.exp(1.0) + 1.0)),
(-1.0, 1.0, -1.0 / (np.exp(-1.0) + 1.0)),
(0.0, 1.0, -0.5), (0.0, -1.0, 0.5),
(17.9, -1.0, 1.0), (-17.9, 1.0, -1.0),
]
_test_gradient_common(loss, cases)
assert_almost_equal(loss.dloss(18.1, 1.0), np.exp(-18.1) * -1.0, 16)
assert_almost_equal(loss.dloss(-18.1, -1.0), np.exp(-18.1) * 1.0, 16)
def test_gradient_squared_loss():
# Test SquaredLoss
loss = sgd_fast.SquaredLoss()
cases = [
# (p, y, expected)
(0.0, 0.0, 0.0), (1.0, 1.0, 0.0), (1.0, 0.0, 1.0),
(0.5, -1.0, 1.5), (-2.5, 2.0, -4.5)
]
_test_gradient_common(loss, cases)
def test_gradient_huber():
# Test Huber
loss = sgd_fast.Huber(0.1)
cases = [
# (p, y, expected)
(0.0, 0.0, 0.0), (0.1, 0.0, 0.1), (0.0, 0.1, -0.1),
(3.95, 4.0, -0.05), (5.0, 2.0, 0.1), (-1.0, 5.0, -0.1)
]
_test_gradient_common(loss, cases)
def test_gradient_modified_huber():
# Test ModifiedHuber
loss = sgd_fast.ModifiedHuber()
cases = [
# (p, y, expected)
(1.0, 1.0, 0.0), (-1.0, -1.0, 0.0), (2.0, 1.0, 0.0),
(0.0, 1.0, -2.0), (-1.0, 1.0, -4.0), (0.5, -1.0, 3.0),
(0.5, -1.0, 3.0), (-2.0, 1.0, -4.0), (-3.0, 1.0, -4.0)
]
_test_gradient_common(loss, cases)
def test_gradient_epsilon_insensitive():
# Test EpsilonInsensitive
loss = sgd_fast.EpsilonInsensitive(0.1)
cases = [
(0.0, 0.0, 0.0), (0.1, 0.0, 0.0), (-2.05, -2.0, 0.0),
(3.05, 3.0, 0.0), (2.2, 2.0, 1.0), (2.0, -1.0, 1.0),
(2.0, 2.2, -1.0), (-2.0, 1.0, -1.0)
]
_test_gradient_common(loss, cases)
def test_gradient_squared_epsilon_insensitive():
# Test SquaredEpsilonInsensitive
loss = sgd_fast.SquaredEpsilonInsensitive(0.1)
cases = [
(0.0, 0.0, 0.0), (0.1, 0.0, 0.0), (-2.05, -2.0, 0.0),
(3.05, 3.0, 0.0), (2.2, 2.0, 0.2), (2.0, -1.0, 5.8),
(2.0, 2.2, -0.2), (-2.0, 1.0, -5.8)
]
_test_gradient_common(loss, cases)
def test_multi_thread_multi_class_and_early_stopping():
# This is a non-regression test for a bad interaction between
# early stopping internal attribute and thread-based parallelism.
clf = SGDClassifier(alpha=1e-3, tol=1e-3, max_iter=1000,
early_stopping=True, n_iter_no_change=100,
random_state=0, n_jobs=2)
clf.fit(iris.data, iris.target)
assert clf.n_iter_ > clf.n_iter_no_change
assert clf.n_iter_ < clf.n_iter_no_change + 20
assert clf.score(iris.data, iris.target) > 0.8
def test_multi_core_gridsearch_and_early_stopping():
# This is a non-regression test for a bad interaction between
# early stopping internal attribute and process-based multi-core
# parallelism.
param_grid = {
'alpha': np.logspace(-4, 4, 9),
'n_iter_no_change': [5, 10, 50],
}
clf = SGDClassifier(tol=1e-2, max_iter=1000, early_stopping=True,
random_state=0)
search = RandomizedSearchCV(clf, param_grid, n_iter=3, n_jobs=2,
random_state=0)
search.fit(iris.data, iris.target)
assert search.best_score_ > 0.8
@pytest.mark.parametrize("backend",
["loky", "multiprocessing", "threading"])
def test_SGDClassifier_fit_for_all_backends(backend):
# This is a non-regression smoke test. In the multi-class case,
# SGDClassifier.fit fits each class in a one-versus-all fashion using
# joblib.Parallel. However, each OvA step updates the coef_ attribute of
# the estimator in-place. Internally, SGDClassifier calls Parallel using
# require='sharedmem'. This test makes sure SGDClassifier.fit works
# consistently even when the user asks for a backend that does not provide
# sharedmem semantics.
# We further test a case where memmapping would have been used if
# SGDClassifier.fit was called from a loky or multiprocessing backend. In
# this specific case, in-place modification of clf.coef_ would have caused
# a segmentation fault when trying to write in a readonly memory mapped
# buffer.
if (parse_version(joblib.__version__) < parse_version('0.12')
and backend == 'loky'):
pytest.skip('loky backend does not exist in joblib <0.12')
random_state = np.random.RandomState(42)
# Create a classification problem with 50000 features and 20 classes. Using
# loky or multiprocessing this make the clf.coef_ exceed the threshold
# above which memmaping is used in joblib and loky (1MB as of 2018/11/1).
X = sp.random(500, 2000, density=0.02, format='csr',
random_state=random_state)
y = random_state.choice(20, 500)
# Begin by fitting a SGD classifier sequentially
clf_sequential = SGDClassifier(max_iter=1000, n_jobs=1,
random_state=42)
clf_sequential.fit(X, y)
# Fit a SGDClassifier using the specified backend, and make sure the
# coefficients are equal to those obtained using a sequential fit
clf_parallel = SGDClassifier(max_iter=1000, n_jobs=4,
random_state=42)
with joblib.parallel_backend(backend=backend):
clf_parallel.fit(X, y)
assert_array_almost_equal(clf_sequential.coef_, clf_parallel.coef_)