637 lines
23 KiB
Python
637 lines
23 KiB
Python
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# Author: Mathieu Blondel <mathieu@mblondel.org>
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# Arnaud Joly <a.joly@ulg.ac.be>
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# Maheshakya Wijewardena <maheshakya.10@cse.mrt.ac.lk>
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# License: BSD 3 clause
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import warnings
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import numpy as np
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import scipy.sparse as sp
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from .base import BaseEstimator, ClassifierMixin, RegressorMixin
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from .base import MultiOutputMixin
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from .utils import check_random_state
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from .utils.validation import _num_samples
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from .utils.validation import check_array
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from .utils.validation import check_consistent_length
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from .utils.validation import check_is_fitted, _check_sample_weight
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from .utils.random import _random_choice_csc
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from .utils.stats import _weighted_percentile
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from .utils.multiclass import class_distribution
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from .utils import deprecated
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from .utils.validation import _deprecate_positional_args
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class DummyClassifier(MultiOutputMixin, ClassifierMixin, BaseEstimator):
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"""
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DummyClassifier is a classifier that makes predictions using simple rules.
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This classifier is useful as a simple baseline to compare with other
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(real) classifiers. Do not use it for real problems.
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Read more in the :ref:`User Guide <dummy_estimators>`.
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.. versionadded:: 0.13
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Parameters
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----------
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strategy : str, default="stratified"
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Strategy to use to generate predictions.
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* "stratified": generates predictions by respecting the training
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set's class distribution.
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* "most_frequent": always predicts the most frequent label in the
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training set.
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* "prior": always predicts the class that maximizes the class prior
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(like "most_frequent") and ``predict_proba`` returns the class prior.
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* "uniform": generates predictions uniformly at random.
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* "constant": always predicts a constant label that is provided by
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the user. This is useful for metrics that evaluate a non-majority
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class
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.. versionchanged:: 0.22
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The default value of `strategy` will change to "prior" in version
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0.24. Starting from version 0.22, a warning will be raised if
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`strategy` is not explicitly set.
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.. versionadded:: 0.17
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Dummy Classifier now supports prior fitting strategy using
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parameter *prior*.
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random_state : int, RandomState instance or None, optional, default=None
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Controls the randomness to generate the predictions when
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``strategy='stratified'`` or ``strategy='uniform'``.
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Pass an int for reproducible output across multiple function calls.
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See :term:`Glossary <random_state>`.
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constant : int or str or array-like of shape (n_outputs,)
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The explicit constant as predicted by the "constant" strategy. This
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parameter is useful only for the "constant" strategy.
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Attributes
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----------
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classes_ : array or list of array of shape (n_classes,)
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Class labels for each output.
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n_classes_ : array or list of array of shape (n_classes,)
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Number of label for each output.
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class_prior_ : array or list of array of shape (n_classes,)
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Probability of each class for each output.
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n_outputs_ : int,
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Number of outputs.
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sparse_output_ : bool,
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True if the array returned from predict is to be in sparse CSC format.
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Is automatically set to True if the input y is passed in sparse format.
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Examples
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--------
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>>> import numpy as np
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>>> from sklearn.dummy import DummyClassifier
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>>> X = np.array([-1, 1, 1, 1])
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>>> y = np.array([0, 1, 1, 1])
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>>> dummy_clf = DummyClassifier(strategy="most_frequent")
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>>> dummy_clf.fit(X, y)
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DummyClassifier(strategy='most_frequent')
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>>> dummy_clf.predict(X)
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array([1, 1, 1, 1])
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>>> dummy_clf.score(X, y)
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0.75
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"""
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@_deprecate_positional_args
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def __init__(self, *, strategy="warn", random_state=None,
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constant=None):
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self.strategy = strategy
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self.random_state = random_state
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self.constant = constant
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def fit(self, X, y, sample_weight=None):
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"""Fit the random classifier.
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Parameters
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----------
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X : {array-like, object with finite length or shape}
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Training data, requires length = n_samples
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y : array-like of shape (n_samples,) or (n_samples, n_outputs)
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Target values.
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sample_weight : array-like of shape (n_samples,), default=None
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Sample weights.
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Returns
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-------
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self : object
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"""
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allowed_strategies = ("most_frequent", "stratified", "uniform",
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"constant", "prior")
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# TODO: Remove in 0.24
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if self.strategy == "warn":
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warnings.warn("The default value of strategy will change from "
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"stratified to prior in 0.24.", FutureWarning)
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self._strategy = "stratified"
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elif self.strategy not in allowed_strategies:
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raise ValueError("Unknown strategy type: %s, expected one of %s."
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% (self.strategy, allowed_strategies))
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else:
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self._strategy = self.strategy
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if self._strategy == "uniform" and sp.issparse(y):
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y = y.toarray()
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warnings.warn('A local copy of the target data has been converted '
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'to a numpy array. Predicting on sparse target data '
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'with the uniform strategy would not save memory '
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'and would be slower.',
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UserWarning)
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self.sparse_output_ = sp.issparse(y)
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if not self.sparse_output_:
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y = np.asarray(y)
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y = np.atleast_1d(y)
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if y.ndim == 1:
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y = np.reshape(y, (-1, 1))
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self.n_outputs_ = y.shape[1]
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self.n_features_in_ = None # No input validation is done for X
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check_consistent_length(X, y)
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if sample_weight is not None:
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sample_weight = _check_sample_weight(sample_weight, X)
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if self._strategy == "constant":
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if self.constant is None:
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raise ValueError("Constant target value has to be specified "
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"when the constant strategy is used.")
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else:
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constant = np.reshape(np.atleast_1d(self.constant), (-1, 1))
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if constant.shape[0] != self.n_outputs_:
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raise ValueError("Constant target value should have "
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"shape (%d, 1)." % self.n_outputs_)
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(self.classes_,
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self.n_classes_,
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self.class_prior_) = class_distribution(y, sample_weight)
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if self._strategy == "constant":
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for k in range(self.n_outputs_):
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if not any(constant[k][0] == c for c in self.classes_[k]):
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# Checking in case of constant strategy if the constant
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# provided by the user is in y.
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err_msg = ("The constant target value must be present in "
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"the training data. You provided constant={}. "
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"Possible values are: {}."
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.format(self.constant, list(self.classes_[k])))
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raise ValueError(err_msg)
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if self.n_outputs_ == 1:
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self.n_classes_ = self.n_classes_[0]
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self.classes_ = self.classes_[0]
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self.class_prior_ = self.class_prior_[0]
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return self
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def predict(self, X):
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"""Perform classification on test vectors X.
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Parameters
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----------
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X : {array-like, object with finite length or shape}
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Training data, requires length = n_samples
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Returns
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-------
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y : array-like of shape (n_samples,) or (n_samples, n_outputs)
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Predicted target values for X.
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"""
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check_is_fitted(self)
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# numpy random_state expects Python int and not long as size argument
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# under Windows
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n_samples = _num_samples(X)
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rs = check_random_state(self.random_state)
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n_classes_ = self.n_classes_
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classes_ = self.classes_
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class_prior_ = self.class_prior_
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constant = self.constant
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if self.n_outputs_ == 1:
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# Get same type even for self.n_outputs_ == 1
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n_classes_ = [n_classes_]
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classes_ = [classes_]
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class_prior_ = [class_prior_]
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constant = [constant]
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# Compute probability only once
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if self._strategy == "stratified":
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proba = self.predict_proba(X)
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if self.n_outputs_ == 1:
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proba = [proba]
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if self.sparse_output_:
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class_prob = None
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if self._strategy in ("most_frequent", "prior"):
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classes_ = [np.array([cp.argmax()]) for cp in class_prior_]
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elif self._strategy == "stratified":
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class_prob = class_prior_
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elif self._strategy == "uniform":
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raise ValueError("Sparse target prediction is not "
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"supported with the uniform strategy")
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elif self._strategy == "constant":
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classes_ = [np.array([c]) for c in constant]
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y = _random_choice_csc(n_samples, classes_, class_prob,
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self.random_state)
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else:
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if self._strategy in ("most_frequent", "prior"):
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y = np.tile([classes_[k][class_prior_[k].argmax()] for
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k in range(self.n_outputs_)], [n_samples, 1])
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elif self._strategy == "stratified":
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y = np.vstack([classes_[k][proba[k].argmax(axis=1)] for
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k in range(self.n_outputs_)]).T
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elif self._strategy == "uniform":
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ret = [classes_[k][rs.randint(n_classes_[k], size=n_samples)]
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for k in range(self.n_outputs_)]
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y = np.vstack(ret).T
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elif self._strategy == "constant":
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y = np.tile(self.constant, (n_samples, 1))
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if self.n_outputs_ == 1:
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y = np.ravel(y)
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return y
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def predict_proba(self, X):
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"""
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Return probability estimates for the test vectors X.
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Parameters
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----------
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X : {array-like, object with finite length or shape}
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Training data, requires length = n_samples
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Returns
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-------
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P : array-like or list of array-lke of shape (n_samples, n_classes)
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Returns the probability of the sample for each class in
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the model, where classes are ordered arithmetically, for each
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output.
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"""
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check_is_fitted(self)
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# numpy random_state expects Python int and not long as size argument
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# under Windows
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n_samples = _num_samples(X)
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rs = check_random_state(self.random_state)
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n_classes_ = self.n_classes_
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classes_ = self.classes_
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class_prior_ = self.class_prior_
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constant = self.constant
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if self.n_outputs_ == 1:
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# Get same type even for self.n_outputs_ == 1
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n_classes_ = [n_classes_]
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classes_ = [classes_]
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class_prior_ = [class_prior_]
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constant = [constant]
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P = []
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for k in range(self.n_outputs_):
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if self._strategy == "most_frequent":
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ind = class_prior_[k].argmax()
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out = np.zeros((n_samples, n_classes_[k]), dtype=np.float64)
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out[:, ind] = 1.0
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elif self._strategy == "prior":
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out = np.ones((n_samples, 1)) * class_prior_[k]
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elif self._strategy == "stratified":
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out = rs.multinomial(1, class_prior_[k], size=n_samples)
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out = out.astype(np.float64)
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elif self._strategy == "uniform":
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out = np.ones((n_samples, n_classes_[k]), dtype=np.float64)
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out /= n_classes_[k]
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elif self._strategy == "constant":
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ind = np.where(classes_[k] == constant[k])
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out = np.zeros((n_samples, n_classes_[k]), dtype=np.float64)
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out[:, ind] = 1.0
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P.append(out)
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if self.n_outputs_ == 1:
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P = P[0]
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return P
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def predict_log_proba(self, X):
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"""
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Return log probability estimates for the test vectors X.
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Parameters
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----------
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X : {array-like, object with finite length or shape}
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Training data, requires length = n_samples
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Returns
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-------
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P : array-like or list of array-like of shape (n_samples, n_classes)
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Returns the log probability of the sample for each class in
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the model, where classes are ordered arithmetically for each
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output.
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"""
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proba = self.predict_proba(X)
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if self.n_outputs_ == 1:
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return np.log(proba)
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else:
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return [np.log(p) for p in proba]
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def _more_tags(self):
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return {
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'poor_score': True, 'no_validation': True,
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'_xfail_checks': {
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'check_methods_subset_invariance':
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'fails for the predict method'
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}
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}
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def score(self, X, y, sample_weight=None):
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"""Returns the mean accuracy on the given test data and labels.
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In multi-label classification, this is the subset accuracy
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which is a harsh metric since you require for each sample that
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each label set be correctly predicted.
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Parameters
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----------
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X : {array-like, None}
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|
Test samples with shape = (n_samples, n_features) or
|
||
|
|
None. Passing None as test samples gives the same result
|
||
|
|
as passing real test samples, since DummyClassifier
|
||
|
|
operates independently of the sampled observations.
|
||
|
|
|
||
|
|
y : array-like of shape (n_samples,) or (n_samples, n_outputs)
|
||
|
|
True labels for X.
|
||
|
|
|
||
|
|
sample_weight : array-like of shape (n_samples,), default=None
|
||
|
|
Sample weights.
|
||
|
|
|
||
|
|
Returns
|
||
|
|
-------
|
||
|
|
score : float
|
||
|
|
Mean accuracy of self.predict(X) wrt. y.
|
||
|
|
|
||
|
|
"""
|
||
|
|
if X is None:
|
||
|
|
X = np.zeros(shape=(len(y), 1))
|
||
|
|
return super().score(X, y, sample_weight)
|
||
|
|
|
||
|
|
# mypy error: Decorated property not supported
|
||
|
|
@deprecated( # type: ignore
|
||
|
|
"The outputs_2d_ attribute is deprecated in version 0.22 "
|
||
|
|
"and will be removed in version 0.24. It is equivalent to "
|
||
|
|
"n_outputs_ > 1."
|
||
|
|
)
|
||
|
|
@property
|
||
|
|
def outputs_2d_(self):
|
||
|
|
return self.n_outputs_ != 1
|
||
|
|
|
||
|
|
|
||
|
|
class DummyRegressor(MultiOutputMixin, RegressorMixin, BaseEstimator):
|
||
|
|
"""
|
||
|
|
DummyRegressor is a regressor that makes predictions using
|
||
|
|
simple rules.
|
||
|
|
|
||
|
|
This regressor is useful as a simple baseline to compare with other
|
||
|
|
(real) regressors. Do not use it for real problems.
|
||
|
|
|
||
|
|
Read more in the :ref:`User Guide <dummy_estimators>`.
|
||
|
|
|
||
|
|
.. versionadded:: 0.13
|
||
|
|
|
||
|
|
Parameters
|
||
|
|
----------
|
||
|
|
strategy : str
|
||
|
|
Strategy to use to generate predictions.
|
||
|
|
|
||
|
|
* "mean": always predicts the mean of the training set
|
||
|
|
* "median": always predicts the median of the training set
|
||
|
|
* "quantile": always predicts a specified quantile of the training set,
|
||
|
|
provided with the quantile parameter.
|
||
|
|
* "constant": always predicts a constant value that is provided by
|
||
|
|
the user.
|
||
|
|
|
||
|
|
constant : int or float or array-like of shape (n_outputs,)
|
||
|
|
The explicit constant as predicted by the "constant" strategy. This
|
||
|
|
parameter is useful only for the "constant" strategy.
|
||
|
|
|
||
|
|
quantile : float in [0.0, 1.0]
|
||
|
|
The quantile to predict using the "quantile" strategy. A quantile of
|
||
|
|
0.5 corresponds to the median, while 0.0 to the minimum and 1.0 to the
|
||
|
|
maximum.
|
||
|
|
|
||
|
|
Attributes
|
||
|
|
----------
|
||
|
|
constant_ : array, shape (1, n_outputs)
|
||
|
|
Mean or median or quantile of the training targets or constant value
|
||
|
|
given by the user.
|
||
|
|
|
||
|
|
n_outputs_ : int,
|
||
|
|
Number of outputs.
|
||
|
|
|
||
|
|
Examples
|
||
|
|
--------
|
||
|
|
>>> import numpy as np
|
||
|
|
>>> from sklearn.dummy import DummyRegressor
|
||
|
|
>>> X = np.array([1.0, 2.0, 3.0, 4.0])
|
||
|
|
>>> y = np.array([2.0, 3.0, 5.0, 10.0])
|
||
|
|
>>> dummy_regr = DummyRegressor(strategy="mean")
|
||
|
|
>>> dummy_regr.fit(X, y)
|
||
|
|
DummyRegressor()
|
||
|
|
>>> dummy_regr.predict(X)
|
||
|
|
array([5., 5., 5., 5.])
|
||
|
|
>>> dummy_regr.score(X, y)
|
||
|
|
0.0
|
||
|
|
"""
|
||
|
|
@_deprecate_positional_args
|
||
|
|
def __init__(self, *, strategy="mean", constant=None, quantile=None):
|
||
|
|
self.strategy = strategy
|
||
|
|
self.constant = constant
|
||
|
|
self.quantile = quantile
|
||
|
|
|
||
|
|
def fit(self, X, y, sample_weight=None):
|
||
|
|
"""Fit the random regressor.
|
||
|
|
|
||
|
|
Parameters
|
||
|
|
----------
|
||
|
|
X : {array-like, object with finite length or shape}
|
||
|
|
Training data, requires length = n_samples
|
||
|
|
|
||
|
|
y : array-like of shape (n_samples,) or (n_samples, n_outputs)
|
||
|
|
Target values.
|
||
|
|
|
||
|
|
sample_weight : array-like of shape (n_samples,), default=None
|
||
|
|
Sample weights.
|
||
|
|
|
||
|
|
Returns
|
||
|
|
-------
|
||
|
|
self : object
|
||
|
|
"""
|
||
|
|
allowed_strategies = ("mean", "median", "quantile", "constant")
|
||
|
|
if self.strategy not in allowed_strategies:
|
||
|
|
raise ValueError("Unknown strategy type: %s, expected one of %s."
|
||
|
|
% (self.strategy, allowed_strategies))
|
||
|
|
|
||
|
|
y = check_array(y, ensure_2d=False)
|
||
|
|
self.n_features_in_ = None # No input validation is done for X
|
||
|
|
if len(y) == 0:
|
||
|
|
raise ValueError("y must not be empty.")
|
||
|
|
|
||
|
|
if y.ndim == 1:
|
||
|
|
y = np.reshape(y, (-1, 1))
|
||
|
|
self.n_outputs_ = y.shape[1]
|
||
|
|
|
||
|
|
check_consistent_length(X, y, sample_weight)
|
||
|
|
|
||
|
|
if sample_weight is not None:
|
||
|
|
sample_weight = _check_sample_weight(sample_weight, X)
|
||
|
|
|
||
|
|
if self.strategy == "mean":
|
||
|
|
self.constant_ = np.average(y, axis=0, weights=sample_weight)
|
||
|
|
|
||
|
|
elif self.strategy == "median":
|
||
|
|
if sample_weight is None:
|
||
|
|
self.constant_ = np.median(y, axis=0)
|
||
|
|
else:
|
||
|
|
self.constant_ = [_weighted_percentile(y[:, k], sample_weight,
|
||
|
|
percentile=50.)
|
||
|
|
for k in range(self.n_outputs_)]
|
||
|
|
|
||
|
|
elif self.strategy == "quantile":
|
||
|
|
if self.quantile is None or not np.isscalar(self.quantile):
|
||
|
|
raise ValueError("Quantile must be a scalar in the range "
|
||
|
|
"[0.0, 1.0], but got %s." % self.quantile)
|
||
|
|
|
||
|
|
percentile = self.quantile * 100.0
|
||
|
|
if sample_weight is None:
|
||
|
|
self.constant_ = np.percentile(y, axis=0, q=percentile)
|
||
|
|
else:
|
||
|
|
self.constant_ = [_weighted_percentile(y[:, k], sample_weight,
|
||
|
|
percentile=percentile)
|
||
|
|
for k in range(self.n_outputs_)]
|
||
|
|
|
||
|
|
elif self.strategy == "constant":
|
||
|
|
if self.constant is None:
|
||
|
|
raise TypeError("Constant target value has to be specified "
|
||
|
|
"when the constant strategy is used.")
|
||
|
|
|
||
|
|
self.constant = check_array(self.constant,
|
||
|
|
accept_sparse=['csr', 'csc', 'coo'],
|
||
|
|
ensure_2d=False, ensure_min_samples=0)
|
||
|
|
|
||
|
|
if self.n_outputs_ != 1 and self.constant.shape[0] != y.shape[1]:
|
||
|
|
raise ValueError(
|
||
|
|
"Constant target value should have "
|
||
|
|
"shape (%d, 1)." % y.shape[1])
|
||
|
|
|
||
|
|
self.constant_ = self.constant
|
||
|
|
|
||
|
|
self.constant_ = np.reshape(self.constant_, (1, -1))
|
||
|
|
return self
|
||
|
|
|
||
|
|
def predict(self, X, return_std=False):
|
||
|
|
"""
|
||
|
|
Perform classification on test vectors X.
|
||
|
|
|
||
|
|
Parameters
|
||
|
|
----------
|
||
|
|
X : {array-like, object with finite length or shape}
|
||
|
|
Training data, requires length = n_samples
|
||
|
|
|
||
|
|
return_std : boolean, optional
|
||
|
|
Whether to return the standard deviation of posterior prediction.
|
||
|
|
All zeros in this case.
|
||
|
|
|
||
|
|
.. versionadded:: 0.20
|
||
|
|
|
||
|
|
Returns
|
||
|
|
-------
|
||
|
|
y : array-like of shape (n_samples,) or (n_samples, n_outputs)
|
||
|
|
Predicted target values for X.
|
||
|
|
|
||
|
|
y_std : array-like of shape (n_samples,) or (n_samples, n_outputs)
|
||
|
|
Standard deviation of predictive distribution of query points.
|
||
|
|
"""
|
||
|
|
check_is_fitted(self)
|
||
|
|
n_samples = _num_samples(X)
|
||
|
|
|
||
|
|
y = np.full((n_samples, self.n_outputs_), self.constant_,
|
||
|
|
dtype=np.array(self.constant_).dtype)
|
||
|
|
y_std = np.zeros((n_samples, self.n_outputs_))
|
||
|
|
|
||
|
|
if self.n_outputs_ == 1:
|
||
|
|
y = np.ravel(y)
|
||
|
|
y_std = np.ravel(y_std)
|
||
|
|
|
||
|
|
return (y, y_std) if return_std else y
|
||
|
|
|
||
|
|
def _more_tags(self):
|
||
|
|
return {'poor_score': True, 'no_validation': True}
|
||
|
|
|
||
|
|
def score(self, X, y, sample_weight=None):
|
||
|
|
"""Returns the coefficient of determination R^2 of the prediction.
|
||
|
|
|
||
|
|
The coefficient R^2 is defined as (1 - u/v), where u is the residual
|
||
|
|
sum of squares ((y_true - y_pred) ** 2).sum() and v is the total
|
||
|
|
sum of squares ((y_true - y_true.mean()) ** 2).sum().
|
||
|
|
The best possible score is 1.0 and it can be negative (because the
|
||
|
|
model can be arbitrarily worse). A constant model that always
|
||
|
|
predicts the expected value of y, disregarding the input features,
|
||
|
|
would get a R^2 score of 0.0.
|
||
|
|
|
||
|
|
Parameters
|
||
|
|
----------
|
||
|
|
X : {array-like, None}
|
||
|
|
Test samples with shape = (n_samples, n_features) or None.
|
||
|
|
For some estimators this may be a
|
||
|
|
precomputed kernel matrix instead, shape = (n_samples,
|
||
|
|
n_samples_fitted], where n_samples_fitted is the number of
|
||
|
|
samples used in the fitting for the estimator.
|
||
|
|
Passing None as test samples gives the same result
|
||
|
|
as passing real test samples, since DummyRegressor
|
||
|
|
operates independently of the sampled observations.
|
||
|
|
|
||
|
|
y : array-like of shape (n_samples,) or (n_samples, n_outputs)
|
||
|
|
True values for X.
|
||
|
|
|
||
|
|
sample_weight : array-like of shape (n_samples,), default=None
|
||
|
|
Sample weights.
|
||
|
|
|
||
|
|
Returns
|
||
|
|
-------
|
||
|
|
score : float
|
||
|
|
R^2 of self.predict(X) wrt. y.
|
||
|
|
"""
|
||
|
|
if X is None:
|
||
|
|
X = np.zeros(shape=(len(y), 1))
|
||
|
|
return super().score(X, y, sample_weight)
|
||
|
|
|
||
|
|
# mypy error: Decorated property not supported
|
||
|
|
@deprecated( # type: ignore
|
||
|
|
"The outputs_2d_ attribute is deprecated in version 0.22 "
|
||
|
|
"and will be removed in version 0.24. It is equivalent to "
|
||
|
|
"n_outputs_ > 1."
|
||
|
|
)
|
||
|
|
@property
|
||
|
|
def outputs_2d_(self):
|
||
|
|
return self.n_outputs_ != 1
|