Vehicle-Anti-Theft-Face-Rec.../venv/Lib/site-packages/skimage/restoration/tests/test_unwrap.py

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import numpy as np
from skimage.restoration import unwrap_phase
import sys
import warnings
from skimage._shared import testing
from skimage._shared.testing import (assert_array_almost_equal_nulp,
assert_almost_equal, assert_array_equal,
assert_, skipif)
from skimage._shared._warnings import expected_warnings
def assert_phase_almost_equal(a, b, *args, **kwargs):
"""An assert_almost_equal insensitive to phase shifts of n*2*pi."""
shift = 2 * np.pi * np.round((b.mean() - a.mean()) / (2 * np.pi))
with expected_warnings([r'invalid value encountered|\A\Z',
r'divide by zero encountered|\A\Z']):
print('assert_phase_allclose, abs', np.max(np.abs(a - (b - shift))))
print('assert_phase_allclose, rel',
np.max(np.abs((a - (b - shift)) / a)))
if np.ma.isMaskedArray(a):
assert_(np.ma.isMaskedArray(b))
assert_array_equal(a.mask, b.mask)
assert_(a.fill_value == b.fill_value)
au = np.asarray(a)
bu = np.asarray(b)
with expected_warnings([r'invalid value encountered|\A\Z',
r'divide by zero encountered|\A\Z']):
print('assert_phase_allclose, no mask, abs',
np.max(np.abs(au - (bu - shift))))
print('assert_phase_allclose, no mask, rel',
np.max(np.abs((au - (bu - shift)) / au)))
assert_array_almost_equal_nulp(a + shift, b, *args, **kwargs)
def check_unwrap(image, mask=None):
image_wrapped = np.angle(np.exp(1j * image))
if mask is not None:
print('Testing a masked image')
image = np.ma.array(image, mask=mask, fill_value=0.5)
image_wrapped = np.ma.array(image_wrapped, mask=mask, fill_value=0.5)
image_unwrapped = unwrap_phase(image_wrapped, seed=0)
assert_phase_almost_equal(image_unwrapped, image)
def test_unwrap_1d():
image = np.linspace(0, 10 * np.pi, 100)
check_unwrap(image)
# Masked arrays are not allowed in 1D
with testing.raises(ValueError):
check_unwrap(image, True)
# wrap_around is not allowed in 1D
with testing.raises(ValueError):
unwrap_phase(image, True, seed=0)
@testing.parametrize("check_with_mask", (False, True))
def test_unwrap_2d(check_with_mask):
mask = None
x, y = np.ogrid[:8, :16]
image = 2 * np.pi * (x * 0.2 + y * 0.1)
if check_with_mask:
mask = np.zeros(image.shape, dtype=np.bool)
mask[4:6, 4:8] = True
check_unwrap(image, mask)
@testing.parametrize("check_with_mask", (False, True))
def test_unwrap_3d(check_with_mask):
mask = None
x, y, z = np.ogrid[:8, :12, :16]
image = 2 * np.pi * (x * 0.2 + y * 0.1 + z * 0.05)
if check_with_mask:
mask = np.zeros(image.shape, dtype=np.bool)
mask[4:6, 4:6, 1:3] = True
check_unwrap(image, mask)
def check_wrap_around(ndim, axis):
# create a ramp, but with the last pixel along axis equalling the first
elements = 100
ramp = np.linspace(0, 12 * np.pi, elements)
ramp[-1] = ramp[0]
image = ramp.reshape(tuple([elements if n == axis else 1
for n in range(ndim)]))
image_wrapped = np.angle(np.exp(1j * image))
index_first = tuple([0] * ndim)
index_last = tuple([-1 if n == axis else 0 for n in range(ndim)])
# unwrap the image without wrap around
# We do not want warnings about length 1 dimensions
with expected_warnings([r'Image has a length 1 dimension|\A\Z']):
image_unwrap_no_wrap_around = unwrap_phase(image_wrapped, seed=0)
print('endpoints without wrap_around:',
image_unwrap_no_wrap_around[index_first],
image_unwrap_no_wrap_around[index_last])
# without wrap around, the endpoints of the image should differ
assert_(abs(image_unwrap_no_wrap_around[index_first] -
image_unwrap_no_wrap_around[index_last]) > np.pi)
# unwrap the image with wrap around
wrap_around = [n == axis for n in range(ndim)]
# We do not want warnings about length 1 dimensions
with expected_warnings([r'Image has a length 1 dimension.|\A\Z']):
image_unwrap_wrap_around = unwrap_phase(image_wrapped, wrap_around,
seed=0)
print('endpoints with wrap_around:',
image_unwrap_wrap_around[index_first],
image_unwrap_wrap_around[index_last])
# with wrap around, the endpoints of the image should be equal
assert_almost_equal(image_unwrap_wrap_around[index_first],
image_unwrap_wrap_around[index_last])
dim_axis = [(ndim, axis) for ndim in (2, 3) for axis in range(ndim)]
@skipif(sys.version_info[:2] == (3, 4),
reason="Doesn't work with python 3.4. See issue #3079")
@testing.parametrize("ndim, axis", dim_axis)
def test_wrap_around(ndim, axis):
check_wrap_around(ndim, axis)
def test_mask():
length = 100
ramps = [np.linspace(0, 4 * np.pi, length),
np.linspace(0, 8 * np.pi, length),
np.linspace(0, 6 * np.pi, length)]
image = np.vstack(ramps)
mask_1d = np.ones((length,), dtype=np.bool)
mask_1d[0] = mask_1d[-1] = False
for i in range(len(ramps)):
# mask all ramps but the i'th one
mask = np.zeros(image.shape, dtype=np.bool)
mask |= mask_1d.reshape(1, -1)
mask[i, :] = False # unmask i'th ramp
image_wrapped = np.ma.array(np.angle(np.exp(1j * image)), mask=mask)
image_unwrapped = unwrap_phase(image_wrapped)
image_unwrapped -= image_unwrapped[0, 0] # remove phase shift
# The end of the unwrapped array should have value equal to the
# endpoint of the unmasked ramp
assert_array_almost_equal_nulp(image_unwrapped[:, -1], image[i, -1])
assert_(np.ma.isMaskedArray(image_unwrapped))
# Same tests, but forcing use of the 3D unwrapper by reshaping
with expected_warnings(['length 1 dimension']):
shape = (1,) + image_wrapped.shape
image_wrapped_3d = image_wrapped.reshape(shape)
image_unwrapped_3d = unwrap_phase(image_wrapped_3d)
# remove phase shift
image_unwrapped_3d -= image_unwrapped_3d[0, 0, 0]
assert_array_almost_equal_nulp(image_unwrapped_3d[:, :, -1],
image[i, -1])
def test_invalid_input():
with testing.raises(ValueError):
unwrap_phase(np.zeros([]))
with testing.raises(ValueError):
unwrap_phase(np.zeros((1, 1, 1, 1)))
with testing.raises(ValueError):
unwrap_phase(np.zeros((1, 1)), 3 * [False])
with testing.raises(ValueError):
unwrap_phase(np.zeros((1, 1)), 'False')
def test_unwrap_3d_middle_wrap_around():
# Segmentation fault in 3D unwrap phase with middle dimension connected
# GitHub issue #1171
image = np.zeros((20, 30, 40), dtype=np.float32)
unwrap = unwrap_phase(image, wrap_around=[False, True, False])
assert_(np.all(unwrap == 0))
def test_unwrap_2d_compressed_mask():
# ValueError when image is masked array with a compressed mask (no masked
# elements). GitHub issue #1346
image = np.ma.zeros((10, 10))
unwrap = unwrap_phase(image)
assert_(np.all(unwrap == 0))
def test_unwrap_2d_all_masked():
# Segmentation fault when image is masked array with a all elements masked
# GitHub issue #1347
# all elements masked
image = np.ma.zeros((10, 10))
image[:] = np.ma.masked
unwrap = unwrap_phase(image)
assert_(np.ma.isMaskedArray(unwrap))
assert_(np.all(unwrap.mask))
# 1 unmasked element, still zero edges
image = np.ma.zeros((10, 10))
image[:] = np.ma.masked
image[0, 0] = 0
unwrap = unwrap_phase(image)
assert_(np.ma.isMaskedArray(unwrap))
assert_(np.sum(unwrap.mask) == 99) # all but one masked
assert_(unwrap[0, 0] == 0)
def test_unwrap_3d_all_masked():
# all elements masked
image = np.ma.zeros((10, 10, 10))
image[:] = np.ma.masked
unwrap = unwrap_phase(image)
assert_(np.ma.isMaskedArray(unwrap))
assert_(np.all(unwrap.mask))
# 1 unmasked element, still zero edges
image = np.ma.zeros((10, 10, 10))
image[:] = np.ma.masked
image[0, 0, 0] = 0
unwrap = unwrap_phase(image)
assert_(np.ma.isMaskedArray(unwrap))
assert_(np.sum(unwrap.mask) == 999) # all but one masked
assert_(unwrap[0, 0, 0] == 0)