564 lines
18 KiB
Python
564 lines
18 KiB
Python
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# -*- coding: utf-8 -*-
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# imageio is distributed under the terms of the (new) BSD License.
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"""
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Various utilities for imageio
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"""
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import os
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import re
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import struct
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import sys
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import time
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import logging
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logger = logging.getLogger("imageio")
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import numpy as np
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IS_PYPY = "__pypy__" in sys.builtin_module_names
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THIS_DIR = os.path.abspath(os.path.dirname(__file__))
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def urlopen(*args, **kwargs):
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""" Compatibility function for the urlopen function. Raises an
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RuntimeError if urlopen could not be imported (which can occur in
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frozen applications.
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"""
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try:
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from urllib.request import urlopen
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except ImportError:
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raise RuntimeError("Could not import urlopen.")
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return urlopen(*args, **kwargs)
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def _precision_warn(p1, p2, extra=""):
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t = (
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"Lossy conversion from {} to {}. {} Convert image to {} prior to "
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"saving to suppress this warning."
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)
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logger.warning(t.format(p1, p2, extra, p2))
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def image_as_uint(im, bitdepth=None):
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""" Convert the given image to uint (default: uint8)
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If the dtype already matches the desired format, it is returned
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as-is. If the image is float, and all values are between 0 and 1,
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the values are multiplied by np.power(2.0, bitdepth). In all other
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situations, the values are scaled such that the minimum value
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becomes 0 and the maximum value becomes np.power(2.0, bitdepth)-1
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(255 for 8-bit and 65535 for 16-bit).
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"""
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if not bitdepth:
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bitdepth = 8
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if not isinstance(im, np.ndarray):
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raise ValueError("Image must be a numpy array")
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if bitdepth == 8:
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out_type = np.uint8
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elif bitdepth == 16:
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out_type = np.uint16
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else:
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raise ValueError("Bitdepth must be either 8 or 16")
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dtype_str1 = str(im.dtype)
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dtype_str2 = out_type.__name__
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if (im.dtype == np.uint8 and bitdepth == 8) or (
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im.dtype == np.uint16 and bitdepth == 16
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):
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# Already the correct format? Return as-is
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return im
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if dtype_str1.startswith("float") and np.nanmin(im) >= 0 and np.nanmax(im) <= 1:
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_precision_warn(dtype_str1, dtype_str2, "Range [0, 1].")
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im = im.astype(np.float64) * (np.power(2.0, bitdepth) - 1) + 0.499999999
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elif im.dtype == np.uint16 and bitdepth == 8:
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_precision_warn(dtype_str1, dtype_str2, "Losing 8 bits of resolution.")
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im = np.right_shift(im, 8)
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elif im.dtype == np.uint32:
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_precision_warn(
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dtype_str1,
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dtype_str2,
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"Losing {} bits of resolution.".format(32 - bitdepth),
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)
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im = np.right_shift(im, 32 - bitdepth)
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elif im.dtype == np.uint64:
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_precision_warn(
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dtype_str1,
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dtype_str2,
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"Losing {} bits of resolution.".format(64 - bitdepth),
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)
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im = np.right_shift(im, 64 - bitdepth)
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else:
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mi = np.nanmin(im)
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ma = np.nanmax(im)
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if not np.isfinite(mi):
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raise ValueError("Minimum image value is not finite")
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if not np.isfinite(ma):
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raise ValueError("Maximum image value is not finite")
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if ma == mi:
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return im.astype(out_type)
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_precision_warn(dtype_str1, dtype_str2, "Range [{}, {}].".format(mi, ma))
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# Now make float copy before we scale
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im = im.astype("float64")
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# Scale the values between 0 and 1 then multiply by the max value
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im = (im - mi) / (ma - mi) * (np.power(2.0, bitdepth) - 1) + 0.499999999
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assert np.nanmin(im) >= 0
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assert np.nanmax(im) < np.power(2.0, bitdepth)
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return im.astype(out_type)
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class Array(np.ndarray):
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""" Array(array, meta=None)
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A subclass of np.ndarray that has a meta attribute. Get the dictionary
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that contains the meta data using ``im.meta``. Convert to a plain numpy
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array using ``np.asarray(im)``.
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"""
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def __new__(cls, array, meta=None):
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# Check
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if not isinstance(array, np.ndarray):
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raise ValueError("Array expects a numpy array.")
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if not (meta is None or isinstance(meta, dict)):
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raise ValueError("Array expects meta data to be a dict.")
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# Convert and return
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meta = meta if meta is not None else {}
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try:
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ob = array.view(cls)
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except AttributeError: # pragma: no cover
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# Just return the original; no metadata on the array in Pypy!
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return array
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ob._copy_meta(meta)
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return ob
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def _copy_meta(self, meta):
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""" Make a 2-level deep copy of the meta dictionary.
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"""
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self._meta = Dict()
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for key, val in meta.items():
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if isinstance(val, dict):
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val = Dict(val) # Copy this level
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self._meta[key] = val
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@property
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def meta(self):
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""" The dict with the meta data of this image.
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"""
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return self._meta
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def __array_finalize__(self, ob):
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""" So the meta info is maintained when doing calculations with
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the array.
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"""
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if isinstance(ob, Array):
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self._copy_meta(ob.meta)
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else:
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self._copy_meta({})
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def __array_wrap__(self, out, context=None):
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""" So that we return a native numpy array (or scalar) when a
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reducting ufunc is applied (such as sum(), std(), etc.)
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"""
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if not out.shape:
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return out.dtype.type(out) # Scalar
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elif out.shape != self.shape:
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return out.view(type=np.ndarray)
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else:
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return out # Type Array
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Image = Array # Alias for backwards compatibility
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def asarray(a):
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""" Pypy-safe version of np.asarray. Pypy's np.asarray consumes a
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*lot* of memory if the given array is an ndarray subclass. This
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function does not.
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"""
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if isinstance(a, np.ndarray):
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if IS_PYPY: # pragma: no cover
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a = a.copy() # pypy has issues with base views
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plain = a.view(type=np.ndarray)
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return plain
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return np.asarray(a)
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from collections import OrderedDict
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class Dict(OrderedDict):
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""" A dict in which the keys can be get and set as if they were
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attributes. Very convenient in combination with autocompletion.
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This Dict still behaves as much as possible as a normal dict, and
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keys can be anything that are otherwise valid keys. However,
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keys that are not valid identifiers or that are names of the dict
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class (such as 'items' and 'copy') cannot be get/set as attributes.
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"""
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__reserved_names__ = dir(OrderedDict()) # Also from OrderedDict
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__pure_names__ = dir(dict())
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def __getattribute__(self, key):
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try:
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return object.__getattribute__(self, key)
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except AttributeError:
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if key in self:
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return self[key]
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else:
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raise
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def __setattr__(self, key, val):
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if key in Dict.__reserved_names__:
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# Either let OrderedDict do its work, or disallow
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if key not in Dict.__pure_names__:
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return OrderedDict.__setattr__(self, key, val)
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else:
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raise AttributeError(
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"Reserved name, this key can only "
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+ "be set via ``d[%r] = X``" % key
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)
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else:
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# if isinstance(val, dict): val = Dict(val) -> no, makes a copy!
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self[key] = val
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def __dir__(self):
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isidentifier = lambda x: bool(re.match(r"[a-z_]\w*$", x, re.I))
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names = [k for k in self.keys() if (isinstance(k, str) and isidentifier(k))]
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return Dict.__reserved_names__ + names
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class BaseProgressIndicator(object):
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""" BaseProgressIndicator(name)
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A progress indicator helps display the progres of a task to the
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user. Progress can be pending, running, finished or failed.
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Each task has:
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* a name - a short description of what needs to be done.
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* an action - the current action in performing the task (e.g. a subtask)
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* progress - how far the task is completed
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* max - max number of progress units. If 0, the progress is indefinite
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* unit - the units in which the progress is counted
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* status - 0: pending, 1: in progress, 2: finished, 3: failed
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This class defines an abstract interface. Subclasses should implement
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_start, _stop, _update_progress(progressText), _write(message).
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"""
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def __init__(self, name):
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self._name = name
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self._action = ""
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self._unit = ""
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self._max = 0
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self._status = 0
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self._last_progress_update = 0
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def start(self, action="", unit="", max=0):
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""" start(action='', unit='', max=0)
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Start the progress. Optionally specify an action, a unit,
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and a maxium progress value.
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"""
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if self._status == 1:
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self.finish()
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self._action = action
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self._unit = unit
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self._max = max
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#
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self._progress = 0
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self._status = 1
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self._start()
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def status(self):
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""" status()
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Get the status of the progress - 0: pending, 1: in progress,
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2: finished, 3: failed
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"""
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return self._status
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def set_progress(self, progress=0, force=False):
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""" set_progress(progress=0, force=False)
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Set the current progress. To avoid unnecessary progress updates
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this will only have a visual effect if the time since the last
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update is > 0.1 seconds, or if force is True.
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"""
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self._progress = progress
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# Update or not?
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if not (force or (time.time() - self._last_progress_update > 0.1)):
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return
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self._last_progress_update = time.time()
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# Compose new string
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unit = self._unit or ""
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progressText = ""
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if unit == "%":
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progressText = "%2.1f%%" % progress
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elif self._max > 0:
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percent = 100 * float(progress) / self._max
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progressText = "%i/%i %s (%2.1f%%)" % (progress, self._max, unit, percent)
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elif progress > 0:
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if isinstance(progress, float):
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progressText = "%0.4g %s" % (progress, unit)
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else:
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progressText = "%i %s" % (progress, unit)
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# Update
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self._update_progress(progressText)
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def increase_progress(self, extra_progress):
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""" increase_progress(extra_progress)
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Increase the progress by a certain amount.
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"""
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self.set_progress(self._progress + extra_progress)
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def finish(self, message=None):
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""" finish(message=None)
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Finish the progress, optionally specifying a message. This will
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not set the progress to the maximum.
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"""
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self.set_progress(self._progress, True) # fore update
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self._status = 2
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self._stop()
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if message is not None:
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self._write(message)
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def fail(self, message=None):
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""" fail(message=None)
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Stop the progress with a failure, optionally specifying a message.
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"""
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self.set_progress(self._progress, True) # fore update
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self._status = 3
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self._stop()
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message = "FAIL " + (message or "")
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self._write(message)
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def write(self, message):
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""" write(message)
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Write a message during progress (such as a warning).
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"""
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if self.__class__ == BaseProgressIndicator:
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# When this class is used as a dummy, print explicit message
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print(message)
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else:
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return self._write(message)
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# Implementing classes should implement these
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def _start(self):
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pass
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def _stop(self):
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pass
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def _update_progress(self, progressText):
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pass
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def _write(self, message):
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pass
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class StdoutProgressIndicator(BaseProgressIndicator):
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""" StdoutProgressIndicator(name)
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A progress indicator that shows the progress in stdout. It
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assumes that the tty can appropriately deal with backspace
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characters.
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"""
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def _start(self):
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self._chars_prefix, self._chars = "", ""
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# Write message
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if self._action:
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self._chars_prefix = "%s (%s): " % (self._name, self._action)
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else:
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self._chars_prefix = "%s: " % self._name
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sys.stdout.write(self._chars_prefix)
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sys.stdout.flush()
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def _update_progress(self, progressText):
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|
|
# If progress is unknown, at least make something move
|
||
|
|
if not progressText:
|
||
|
|
i1, i2, i3, i4 = "-\\|/"
|
||
|
|
M = {i1: i2, i2: i3, i3: i4, i4: i1}
|
||
|
|
progressText = M.get(self._chars, i1)
|
||
|
|
# Store new string and write
|
||
|
|
delChars = "\b" * len(self._chars)
|
||
|
|
self._chars = progressText
|
||
|
|
sys.stdout.write(delChars + self._chars)
|
||
|
|
sys.stdout.flush()
|
||
|
|
|
||
|
|
def _stop(self):
|
||
|
|
self._chars = self._chars_prefix = ""
|
||
|
|
sys.stdout.write("\n")
|
||
|
|
sys.stdout.flush()
|
||
|
|
|
||
|
|
def _write(self, message):
|
||
|
|
# Write message
|
||
|
|
delChars = "\b" * len(self._chars_prefix + self._chars)
|
||
|
|
sys.stdout.write(delChars + " " + message + "\n")
|
||
|
|
# Reprint progress text
|
||
|
|
sys.stdout.write(self._chars_prefix + self._chars)
|
||
|
|
sys.stdout.flush()
|
||
|
|
|
||
|
|
|
||
|
|
# From pyzolib/paths.py (https://bitbucket.org/pyzo/pyzolib/src/tip/paths.py)
|
||
|
|
def appdata_dir(appname=None, roaming=False):
|
||
|
|
""" appdata_dir(appname=None, roaming=False)
|
||
|
|
|
||
|
|
Get the path to the application directory, where applications are allowed
|
||
|
|
to write user specific files (e.g. configurations). For non-user specific
|
||
|
|
data, consider using common_appdata_dir().
|
||
|
|
If appname is given, a subdir is appended (and created if necessary).
|
||
|
|
If roaming is True, will prefer a roaming directory (Windows Vista/7).
|
||
|
|
"""
|
||
|
|
|
||
|
|
# Define default user directory
|
||
|
|
userDir = os.getenv("IMAGEIO_USERDIR", None)
|
||
|
|
if userDir is None:
|
||
|
|
userDir = os.path.expanduser("~")
|
||
|
|
if not os.path.isdir(userDir): # pragma: no cover
|
||
|
|
userDir = "/var/tmp" # issue #54
|
||
|
|
|
||
|
|
# Get system app data dir
|
||
|
|
path = None
|
||
|
|
if sys.platform.startswith("win"):
|
||
|
|
path1, path2 = os.getenv("LOCALAPPDATA"), os.getenv("APPDATA")
|
||
|
|
path = (path2 or path1) if roaming else (path1 or path2)
|
||
|
|
elif sys.platform.startswith("darwin"):
|
||
|
|
path = os.path.join(userDir, "Library", "Application Support")
|
||
|
|
# On Linux and as fallback
|
||
|
|
if not (path and os.path.isdir(path)):
|
||
|
|
path = userDir
|
||
|
|
|
||
|
|
# Maybe we should store things local to the executable (in case of a
|
||
|
|
# portable distro or a frozen application that wants to be portable)
|
||
|
|
prefix = sys.prefix
|
||
|
|
if getattr(sys, "frozen", None):
|
||
|
|
prefix = os.path.abspath(os.path.dirname(sys.executable))
|
||
|
|
for reldir in ("settings", "../settings"):
|
||
|
|
localpath = os.path.abspath(os.path.join(prefix, reldir))
|
||
|
|
if os.path.isdir(localpath): # pragma: no cover
|
||
|
|
try:
|
||
|
|
open(os.path.join(localpath, "test.write"), "wb").close()
|
||
|
|
os.remove(os.path.join(localpath, "test.write"))
|
||
|
|
except IOError:
|
||
|
|
pass # We cannot write in this directory
|
||
|
|
else:
|
||
|
|
path = localpath
|
||
|
|
break
|
||
|
|
|
||
|
|
# Get path specific for this app
|
||
|
|
if appname:
|
||
|
|
if path == userDir:
|
||
|
|
appname = "." + appname.lstrip(".") # Make it a hidden directory
|
||
|
|
path = os.path.join(path, appname)
|
||
|
|
if not os.path.isdir(path): # pragma: no cover
|
||
|
|
os.makedirs(path, exist_ok=True)
|
||
|
|
|
||
|
|
# Done
|
||
|
|
return path
|
||
|
|
|
||
|
|
|
||
|
|
def resource_dirs():
|
||
|
|
""" resource_dirs()
|
||
|
|
|
||
|
|
Get a list of directories where imageio resources may be located.
|
||
|
|
The first directory in this list is the "resources" directory in
|
||
|
|
the package itself. The second directory is the appdata directory
|
||
|
|
(~/.imageio on Linux). The list further contains the application
|
||
|
|
directory (for frozen apps), and may include additional directories
|
||
|
|
in the future.
|
||
|
|
"""
|
||
|
|
dirs = [resource_package_dir()]
|
||
|
|
# Resource dir baked in the package.
|
||
|
|
# Appdata directory
|
||
|
|
try:
|
||
|
|
dirs.append(appdata_dir("imageio"))
|
||
|
|
except Exception: # pragma: no cover
|
||
|
|
pass # The home dir may not be writable
|
||
|
|
# Directory where the app is located (mainly for frozen apps)
|
||
|
|
if getattr(sys, "frozen", None):
|
||
|
|
dirs.append(os.path.abspath(os.path.dirname(sys.executable)))
|
||
|
|
elif sys.path and sys.path[0]:
|
||
|
|
dirs.append(os.path.abspath(sys.path[0]))
|
||
|
|
return dirs
|
||
|
|
|
||
|
|
|
||
|
|
def resource_package_dir():
|
||
|
|
""" package_dir
|
||
|
|
|
||
|
|
Get the resources directory in the imageio package installation
|
||
|
|
directory.
|
||
|
|
|
||
|
|
Notes
|
||
|
|
-----
|
||
|
|
This is a convenience method that is used by `resource_dirs` and
|
||
|
|
imageio entry point scripts.
|
||
|
|
"""
|
||
|
|
# Make pkg_resources optional if setuptools is not available
|
||
|
|
try:
|
||
|
|
# Avoid importing pkg_resources in the top level due to how slow it is
|
||
|
|
# https://github.com/pypa/setuptools/issues/510
|
||
|
|
import pkg_resources
|
||
|
|
except ImportError:
|
||
|
|
pkg_resources = None
|
||
|
|
|
||
|
|
if pkg_resources:
|
||
|
|
# The directory returned by `pkg_resources.resource_filename`
|
||
|
|
# also works with eggs.
|
||
|
|
pdir = pkg_resources.resource_filename("imageio", "resources")
|
||
|
|
else:
|
||
|
|
# If setuptools is not available, use fallback
|
||
|
|
pdir = os.path.abspath(os.path.join(THIS_DIR, "..", "resources"))
|
||
|
|
return pdir
|
||
|
|
|
||
|
|
|
||
|
|
def get_platform():
|
||
|
|
""" get_platform()
|
||
|
|
|
||
|
|
Get a string that specifies the platform more specific than
|
||
|
|
sys.platform does. The result can be: linux32, linux64, win32,
|
||
|
|
win64, osx32, osx64. Other platforms may be added in the future.
|
||
|
|
"""
|
||
|
|
# Get platform
|
||
|
|
if sys.platform.startswith("linux"):
|
||
|
|
plat = "linux%i"
|
||
|
|
elif sys.platform.startswith("win"):
|
||
|
|
plat = "win%i"
|
||
|
|
elif sys.platform.startswith("darwin"):
|
||
|
|
plat = "osx%i"
|
||
|
|
elif sys.platform.startswith("freebsd"):
|
||
|
|
plat = "freebsd%i"
|
||
|
|
else: # pragma: no cover
|
||
|
|
return None
|
||
|
|
|
||
|
|
return plat % (struct.calcsize("P") * 8) # 32 or 64 bits
|
||
|
|
|
||
|
|
|
||
|
|
def has_module(module_name):
|
||
|
|
"""Check to see if a python module is available.
|
||
|
|
"""
|
||
|
|
if sys.version_info > (3, 4):
|
||
|
|
import importlib
|
||
|
|
|
||
|
|
name_parts = module_name.split(".")
|
||
|
|
for i in range(len(name_parts)):
|
||
|
|
if importlib.util.find_spec(".".join(name_parts[: i + 1])) is None:
|
||
|
|
return False
|
||
|
|
return True
|
||
|
|
else: # pragma: no cover
|
||
|
|
import imp
|
||
|
|
|
||
|
|
try:
|
||
|
|
imp.find_module(module_name)
|
||
|
|
except ImportError:
|
||
|
|
return False
|
||
|
|
return True
|